Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 567 2e-159 seq2 567 2e-159 >seq3 Length=3518759 Score = 567 bits (628), Expect = 2e-159 Identities = 442/530 (83%), Gaps = 38/530 (7%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||||||| ||| ||||| | |||| ||||||||||||||| Sbjct 500056 CTTTTGGTCCACGTGAGATTTCTGTCCTCACTGAGTTCGCCTTGGGACACCTGCGTTATC 500115 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||| | ||||| || | |||| Sbjct 500116 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGGCTATGTCTTC--CGCGGAA- 500172 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-- 184 |||| || || |||||| || |||||| Sbjct 500173 -----GCGAC-------AAGGCGAGAAAAG------------------CCCTTTCATTAC 500202 Query 185 -GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||| || | ||| ||||||||||||||||||| ||| || | | ||||||| Sbjct 500203 GGAATAAGCAAGACAACATCAAGGGTAGTGGTATTTCACCGGCGGCGGAGC--CTCCCAC 500260 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||| ||||||| |||||||| | |||||||| ||||||||||| ||||||||||||||| Sbjct 500261 CTATGCTACACCCCTCAAGTCGTCTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTC 500320 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | || Sbjct 500321 TTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAG 500380 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500381 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 500440 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500441 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 500500 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 500501 TCATCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 500550 Score = 567 bits (628), Expect = 2e-159 Identities = 442/530 (83%), Gaps = 38/530 (7%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||||||| ||| ||||| | |||| ||||||||||||||| Sbjct 610696 CTTTTGGTCCACGTGAGATTTCTGTCCTCACTGAGTTCGCCTTGGGACACCTGCGTTATC 610755 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||| | ||||| || | |||| Sbjct 610756 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGGCTATGTCTTC--CGCGGAA- 610812 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-- 184 |||| || || |||||| || |||||| Sbjct 610813 -----GCGAC-------AAGGCGAGAAAAG------------------CCCTTTCATTAC 610842 Query 185 -GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||| || | ||| ||||||||||||||||||| ||| || | | ||||||| Sbjct 610843 GGAATAAGCAAGACAACATCAAGGGTAGTGGTATTTCACCGGCGGCGGAGC--CTCCCAC 610900 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||| ||||||| |||||||| | |||||||| ||||||||||| ||||||||||||||| Sbjct 610901 CTATGCTACACCCCTCAAGTCGTCTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTC 610960 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | || Sbjct 610961 TTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAG 611020 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611021 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 611080 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611081 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 611140 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 611141 TCATCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 611190 >seq2 Length=2823968 Score = 567 bits (628), Expect = 2e-159 Identities = 442/530 (83%), Gaps = 38/530 (7%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||||||| ||| ||||| | |||| ||||||||||||||| Sbjct 1833764 CTTTTGGTCCACGTGAGATTTCTGTCCTCACTGAGTTCGCCTTGGGACACCTGCGTTATC 1833705 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||| | ||||| || | |||| Sbjct 1833704 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGGCTATGTCTTC--CGCGGAA- 1833648 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-- 184 |||| || || |||||| || |||||| Sbjct 1833647 -----GCGAC-------AAGGCGAGAAAAG------------------CCCTTTCATTAC 1833618 Query 185 -GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||| || | ||| ||||||||||||||||||| ||| || | | ||||||| Sbjct 1833617 GGAATAAGCAAGACAACATCAAGGGTAGTGGTATTTCACCGGCGGCGGAGC--CTCCCAC 1833560 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||| ||||||| |||||||| | |||||||| ||||||||||| ||||||||||||||| Sbjct 1833559 CTATGCTACACCCCTCAAGTCGTCTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTC 1833500 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | || Sbjct 1833499 TTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAG 1833440 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1833439 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 1833380 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1833379 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 1833320 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1833319 TCATCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 1833270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192101984