Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3 428 1e-117 seq2 428 1e-117 >seq3 Length=3518759 Score = 428 bits (474), Expect = 1e-117 Identities = 399/500 (80%), Gaps = 40/500 (8%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||||||| || ||||||||| ||||| ||||||||||||||| Sbjct 504681 TCATTCCAATTACAAGACGAAA----GCCCTGTATTGTTATTTCTTGTCACTACCTCCCT 504736 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 504737 GTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTC 504796 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct 504797 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCTGCCTCGGTAGGCC 504856 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||||| || ||| |||| ||||||||| ||||||| | ||||| ||| Sbjct 504857 AATACCCTACCGTC--AAGCTGATGGGGCAGAAACTTGAATGGAACATCG------CAA- 504907 Query 245 GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 | |||||||| | |||||||||||||||| || ||| ||||| Sbjct 504908 ---AAGCGATTCGCAAGTTTATTATGAATCACCA--GA----AAAAG-----TGGTTAAG 504953 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 | |||||||| | | || || || | | | ||||||||| ||| |||| Sbjct 504954 GAACTAATAAA-----CGCCGCCAAA----AGGCCTCGAACTTGTATTAGCCCTACAATT 505004 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 | |||||||||||||| | || | ||| |||| |||| ||||||| | |||||||||| Sbjct 505005 AGCACGGTTATCCATGGA-AAACGAACT-CCAAAGAAACTATAACTGTTGTAATGAGCCA 505062 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||| ||| | | |||| ||||||||||||||||||||||||||| |||| Sbjct 505063 TTCGCAGTTTCACCGTAAAAA--GCTTGTACTTAGACATGCATGGCTTAATCTTTAAGAC 505120 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 505121 AAGCATATGACTACTGGCAG 505140 Score = 428 bits (474), Expect = 1e-117 Identities = 399/500 (80%), Gaps = 40/500 (8%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||||||| || ||||||||| ||||| ||||||||||||||| Sbjct 615323 TCATTCCAATTACAAGACGAAA----GCCCTGTATTGTTATTTCTTGTCACTACCTCCCT 615378 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 615379 GTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTC 615438 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct 615439 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCTGCCTCGGTAGGCC 615498 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||||| || ||| |||| ||||||||| ||||||| | ||||| ||| Sbjct 615499 AATACCCTACCGTC--AAGCTGATGGGGCAGAAACTTGAATGGAACATCG------CAA- 615549 Query 245 GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 | |||||||| | |||||||||||||||| || ||| ||||| Sbjct 615550 ---AAGCGATTCGCAAGTTTATTATGAATCACCA--GA----AAAAG-----TGGTTAAG 615595 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 | |||||||| | | || || || | | | ||||||||| ||| |||| Sbjct 615596 GAACTAATAAA-----CGCCGCCAAA----AGGCCTCGAACTTGTATTAGCCCTACAATT 615646 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 | |||||||||||||| | || | ||| |||| |||| ||||||| | |||||||||| Sbjct 615647 AGCACGGTTATCCATGGA-AAACGAACT-CCAAAGAAACTATAACTGTTGTAATGAGCCA 615704 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||| ||| | | |||| ||||||||||||||||||||||||||| |||| Sbjct 615705 TTCGCAGTTTCACCGTAAAAA--GCTTGTACTTAGACATGCATGGCTTAATCTTTAAGAC 615762 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 615763 AAGCATATGACTACTGGCAG 615782 >seq2 Length=2823968 Score = 428 bits (474), Expect = 1e-117 Identities = 399/500 (80%), Gaps = 40/500 (8%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||||||| || ||||||||| ||||| ||||||||||||||| Sbjct 1829121 TCATTCCAATTACAAGACGAAA----GCCCTGTATTGTTATTTCTTGTCACTACCTCCCT 1829066 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1829065 GTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTC 1829006 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct 1829005 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCTGCCTCGGTAGGCC 1828946 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||||| || ||| |||| ||||||||| ||||||| | ||||| ||| Sbjct 1828945 AATACCCTACCGTC--AAGCTGATGGGGCAGAAACTTGAATGGAACATCG------CAA- 1828895 Query 245 GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 | |||||||| | |||||||||||||||| || ||| ||||| Sbjct 1828894 ---AAGCGATTCGCAAGTTTATTATGAATCACCA--GA----AAAAG-----TGGTTAAG 1828849 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 | |||||||| | | || || || | | | ||||||||| ||| |||| Sbjct 1828848 GAACTAATAAA-----CGCCGCCAAA----AGGCCTCGAACTTGTATTAGCCCTACAATT 1828798 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 | |||||||||||||| | || | ||| |||| |||| ||||||| | |||||||||| Sbjct 1828797 AGCACGGTTATCCATGGA-AAACGAACT-CCAAAGAAACTATAACTGTTGTAATGAGCCA 1828740 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||| ||| | | |||| ||||||||||||||||||||||||||| |||| Sbjct 1828739 TTCGCAGTTTCACCGTAAAAA--GCTTGTACTTAGACATGCATGGCTTAATCTTTAAGAC 1828682 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 1828681 AAGCATATGACTACTGGCAG 1828662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392704768