Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2 179 2e-42 seq3 174 7e-41 >seq2 Length=2823968 Score = 179 bits (198), Expect = 2e-42 Identities = 212/282 (75%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||| || | |||||||| |||||||||| || Sbjct 1831757 CCCGTCTTGAAACACGGACCAAGGAGTCTATCACCCGTGCGAGTGCCTGGGTGTCAACCC 1831816 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGT-GGGAACCCGTGAGGGTGCACC--AT-CGACC 523 | ||||||||||||||||| | | || ||| || | | | | || || || || Sbjct 1831817 CTCGCGCGTAATGAAAGTGAGAGCATGTCGGGTTTCCTTTCGATTCCCCCTCATGCGGCC 1831876 Query 524 GATCCTGATGT--CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | || | | ||||| | ||| |||| | || | ||||||||||||| Sbjct 1831877 GG-CGTGGTTTTCCTTCGTCGCGCTTT-------AGCACGGTTGCTAGGACCCGAAAGAT 1831928 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||||||||||||| |||| ||||| ||| |||| ||| |||||| ||||||| | Sbjct 1831929 GGTGAACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCAGCGAT 1831988 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||||||| |||||||||||||| Sbjct 1831989 ACTGACGTGCAAATCGTTCGTCAAATCCGGGTATAGGGGCGA 1832030 Score = 138 bits (152), Expect = 5e-30 Identities = 132/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| |||||| Sbjct 1831406 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGGCTTCTCATAAGACTAAAT 1831465 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| |||| ||||||||||||| ||| ||||| Sbjct 1831466 ATTGGTGTGAGACCGATAGCTTACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGGAA 1831525 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| || ||||||||| ||| ||| Sbjct 1831526 AGAGTGTT-AAAAGTACCTGAAATTGCTGTAAGGGAAGCAATTGGAAC 1831572 >seq3 Length=3518759 Score = 174 bits (192), Expect = 7e-41 Identities = 209/282 (74%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||| || | |||||||| |||||||||| || Sbjct 502063 CCCGTCTTGAAACACGGACCAAGGAGTCTATCACCCGTGCGAGTGCCTGGGTGTCAACCC 502004 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATC----GACC 523 | ||||||||||||||||| | | || || | | | | | || || | || Sbjct 502003 CTCGCGCGTAATGAAAGTGAGAGCATGTCGGGTTTCCTCTCGATTCCCCCTCATGCGGCC 501944 Query 524 GATCCTGATGT--CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | || | | ||||| | ||| |||| | || | ||||||||||||| Sbjct 501943 GG-CGTGGTTTTCCTTCGTCGCGCTTT-------AGCACGGTTGCTAGGACCCGAAAGAT 501892 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||||||||||||| |||| ||||| ||| |||| ||| |||||| ||||||| | Sbjct 501891 GGTGAACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCAGCGAT 501832 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||||||| |||||||||||||| Sbjct 501831 ACTGACGTGCAAATCGTTCGTCAAATCCGGGTATAGGGGCGA 501790 Score = 174 bits (192), Expect = 7e-41 Identities = 209/282 (74%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||| || | |||||||| |||||||||| || Sbjct 612703 CCCGTCTTGAAACACGGACCAAGGAGTCTATCACCCGTGCGAGTGCCTGGGTGTCAACCC 612644 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATC----GACC 523 | ||||||||||||||||| | | || || | | | | | || || | || Sbjct 612643 CTCGCGCGTAATGAAAGTGAGAGCATGTCGGGTTTCCTCTCGATTCCCCCTCATGCGGCC 612584 Query 524 GATCCTGATGT--CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | || | | ||||| | ||| |||| | || | ||||||||||||| Sbjct 612583 GG-CGTGGTTTTCCTTCGTCGCGCTTT-------AGCACGGTTGCTAGGACCCGAAAGAT 612532 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||||||||||||| |||| ||||| ||| |||| ||| |||||| ||||||| | Sbjct 612531 GGTGAACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCAGCGAT 612472 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||||||| |||||||||||||| Sbjct 612471 ACTGACGTGCAAATCGTTCGTCAAATCCGGGTATAGGGGCGA 612430 Score = 138 bits (152), Expect = 5e-30 Identities = 132/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| |||||| Sbjct 502416 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGGCTTCTCATAAGACTAAAT 502357 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| |||| ||||||||||||| ||| ||||| Sbjct 502356 ATTGGTGTGAGACCGATAGCTTACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGGAA 502297 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| || ||||||||| ||| ||| Sbjct 502296 AGAGTGTT-AAAAGTACCTGAAATTGCTGTAAGGGAAGCAATTGGAAC 502250 Score = 138 bits (152), Expect = 5e-30 Identities = 132/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| |||||| Sbjct 613054 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGGCTTCTCATAAGACTAAAT 612995 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| |||| ||||||||||||| ||| ||||| Sbjct 612994 ATTGGTGTGAGACCGATAGCTTACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGGAA 612935 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| || ||||||||| ||| ||| Sbjct 612934 AGAGTGTT-AAAAGTACCTGAAATTGCTGTAAGGGAAGCAATTGGAAC 612888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079989639650