Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3 309 5e-82 seq2 309 5e-82 >seq3 Length=3518759 Score = 309 bits (342), Expect = 5e-82 Identities = 226/259 (87%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | | |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 503766 ACTCGATGGATGCATCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGA 503825 Query 62 CCTGTTATTGCCTCAAACTTCCATTG-GCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||| |||||||| ||| ||||| || |||||||||||||||| | Sbjct 503826 CCTGTTATTGCCTTAAACTTCCCCCACGCTTGAAGCACAGGAGTCCCTCTAAGAAGCAAA 503885 Query 120 CCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | || | | |||| |||||||||||||||||||||||||| ||||||| Sbjct 503886 CGAGGA--CGAAATCCAAGCAGCTAGTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATT 503943 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 503944 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAAAGAATCAAG 504003 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| Sbjct 504004 AAAGAGCTATCAATCTGTC 504022 Score = 309 bits (342), Expect = 5e-82 Identities = 226/259 (87%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | | |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 614408 ACTCGATGGATGCATCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGA 614467 Query 62 CCTGTTATTGCCTCAAACTTCCATTG-GCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||| |||||||| ||| ||||| || |||||||||||||||| | Sbjct 614468 CCTGTTATTGCCTTAAACTTCCCCCACGCTTGAAGCACAGGAGTCCCTCTAAGAAGCAAA 614527 Query 120 CCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | || | | |||| |||||||||||||||||||||||||| ||||||| Sbjct 614528 CGAGGA--CGAAATCCAAGCAGCTAGTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATT 614585 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 614586 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAAAGAATCAAG 614645 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| Sbjct 614646 AAAGAGCTATCAATCTGTC 614664 >seq2 Length=2823968 Score = 309 bits (342), Expect = 5e-82 Identities = 226/259 (87%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | | |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 1830036 ACTCGATGGATGCATCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGA 1829977 Query 62 CCTGTTATTGCCTCAAACTTCCATTG-GCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||| |||||||| ||| ||||| || |||||||||||||||| | Sbjct 1829976 CCTGTTATTGCCTTAAACTTCCCCCACGCTTGAAGCACAGGAGTCCCTCTAAGAAGCAAA 1829917 Query 120 CCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | || | | |||| |||||||||||||||||||||||||| ||||||| Sbjct 1829916 CGAGGA--CGAAATCCAAGCAGCTAGTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATT 1829859 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1829858 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAAAGAATCAAG 1829799 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| Sbjct 1829798 AAAGAGCTATCAATCTGTC 1829780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796271723