Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 141 4e-31 seq9 141 4e-31 >seq10 Length=1797577 Score = 141 bits (156), Expect = 4e-31 Identities = 108/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | || | |||||||||||||||||||||||||||| |||| ||||||||| | Sbjct 576851 AGCACACTTGGTAGGACCCGAAAGATGGTGAACTATGCCTGGGTAGGATGAAGCCAGGCG 576792 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||| |||||||||| ||||||| | ||| ||||||||||| |||||||| ||||||| Sbjct 576791 AAAGCCTGGTGGAGGTCCGCAGCGATACTGACGTGCAAATCGTTCGTCAAACCTGGGTAT 576732 Query 676 AGGGGCGA 683 |||||||| Sbjct 576731 AGGGGCGA 576724 Score = 107 bits (118), Expect = 8e-21 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||| | ||| | || | |||||| |||| || |||||| Sbjct 577299 GAGTCGCGTTCTTTGGGATTTGAGCGCCAAC-GTGAGGTAGTCTTCTCACAAGACTAAAT 577241 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | || ||| |||||||| ||||||| |||| ||||| ||||||||||| || || Sbjct 577240 ACTTGCGCGAGCCCGATAGCTTACAAGTACCGTGAGGGAAAGGTGAAAAGCACTCTGTAA 577181 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| || |||||||| ||| ||| Sbjct 577180 AGAGGGTT-AAAAGTACCTGAAATTGCTGGTAGGGAAGCTTTTGGAAC 577134 >seq9 Length=2593320 Score = 141 bits (156), Expect = 4e-31 Identities = 108/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | || | |||||||||||||||||||||||||||| |||| ||||||||| | Sbjct 162792 AGCACACTTGGTAGGACCCGAAAGATGGTGAACTATGCCTGGGTAGGATGAAGCCAGGCG 162733 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||| |||||||||| ||||||| | ||| ||||||||||| |||||||| ||||||| Sbjct 162732 AAAGCCTGGTGGAGGTCCGCAGCGATACTGACGTGCAAATCGTTCGTCAAACCTGGGTAT 162673 Query 676 AGGGGCGA 683 |||||||| Sbjct 162672 AGGGGCGA 162665 Score = 141 bits (156), Expect = 4e-31 Identities = 108/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | || | |||||||||||||||||||||||||||| |||| ||||||||| | Sbjct 291582 AGCACACTTGGTAGGACCCGAAAGATGGTGAACTATGCCTGGGTAGGATGAAGCCAGGCG 291523 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||| |||||||||| ||||||| | ||| ||||||||||| |||||||| ||||||| Sbjct 291522 AAAGCCTGGTGGAGGTCCGCAGCGATACTGACGTGCAAATCGTTCGTCAAACCTGGGTAT 291463 Query 676 AGGGGCGA 683 |||||||| Sbjct 291462 AGGGGCGA 291455 Score = 111 bits (122), Expect = 7e-22 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||| | ||| |||| | |||||| |||| || |||||| Sbjct 163240 GAGTCGCGTTCTTTGGGATTTGAGCGCTAAC-GTGAGGTAGTCTTCTCACAAGACTAAAT 163182 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | || ||| |||||||| ||||||| |||| ||||| ||||||||||| || || Sbjct 163181 ACTTGCGCGAGCCCGATAGCTTACAAGTACCGTGAGGGAAAGGTGAAAAGCACTCTGTAA 163122 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| || |||||||| ||| ||| Sbjct 163121 AGAGGGTT-AAAAGTACCTGAAATTGCTGGTAGGGAAGCTTTTGGAAC 163075 Score = 107 bits (118), Expect = 8e-21 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||| | ||| | || | |||||| |||| || |||||| Sbjct 292030 GAGTCGCGTTCTTTGGGATTTGAGCGCCAAC-GTGAGGTAGTCTTCTCACAAGACTAAAT 291972 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | || ||| |||||||| ||||||| |||| ||||| ||||||||||| || || Sbjct 291971 ACTTGCGCGAGCCCGATAGCTTACAAGTACCGTGAGGGAAAGGTGAAAAGCACTCTGTAA 291912 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| || |||||||| ||| ||| Sbjct 291911 AGAGGGTT-AAAAGTACCTGAAATTGCTGGTAGGGAAGCTTTTGGAAC 291865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999699700