Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9 205 2e-50 seq10 199 7e-49 >seq9 Length=2593320 Score = 205 bits (226), Expect = 2e-50 Identities = 239/314 (76%), Gaps = 13/314 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG--CTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||||||||||||| ||| | || || ||||| | | ||| |||| | Sbjct 293314 GAACGAGACCTTAACCTGCTATTTAGTC--GCTCGGTCTTTGTCCGTGCGCA--CTTCAT 293259 Query 78 AGAGGGACTAT-CGGC-TCAAGCCGATG-GAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||| | |||| |||||| | | || |||| ||||||||||||||||||||||| Sbjct 293258 AGAGGGACTCTGCGGCGTCAAGCTGCGGTGAGGTTTAAGGCAATAACAGGTCTGTGATGC 293199 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||| |||||| |||||||||||||||||| | || ||| | ||| Sbjct 293198 CCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGATGCTTGCCTCGTGTT--TACCCTC 293141 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| ||| | ||||| | || || ||||| | ||||| || | ||||||| Sbjct 293140 GGCCGATAGGCCCTGGTAACC--CCTAGTCTGCATCGTGTTTGGGATTGATCTTTGCAAT 293083 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | | | || | |||||||||||||||||| |||| ||||||||| | | |||||||| Sbjct 293082 TCTAGATCATGAACGAGGAATGCCTAGTATGCGCAAGTCATCAGCTTGTGCAGATTACGT 293023 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 293022 CCCTGCCCTTTGTA 293009 Score = 199 bits (220), Expect = 7e-49 Identities = 238/314 (76%), Gaps = 13/314 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG--CTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||||||||||||| ||| | || || || || | | ||| |||| | Sbjct 164532 GAACGAGACCTTAACCTGCTATTTAGTC--GCTCGGTCTCTGTCCGCGCGCA--CTTCAT 164477 Query 78 AGAGGGACTAT-CGGC-TCAAGCCGATG-GAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||| | |||| |||||| | | || |||| ||||||||||||||||||||||| Sbjct 164476 AGAGGGACTCTGCGGCGTCAAGCTGCGGTGAGGTTTAAGGCAATAACAGGTCTGTGATGC 164417 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||| |||||| |||||||||||||||||| | || ||| | ||| Sbjct 164416 CCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGATGCTTGCCTCGTGTT--TACCCTC 164359 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| ||| | ||||| | || || ||||| | ||||| || | ||||||| Sbjct 164358 GGCCGATAGGCCCTGGTAACC--CCTAGTCTGCATCGTGTTTGGGATTGATCTTTGCAAT 164301 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | | | || | |||||||||||||||||| |||| ||||||||| | | |||||||| Sbjct 164300 TCTAGATCATGAACGAGGAATGCCTAGTATGCGCAAGTCATCAGCTTGTGCAGATTACGT 164241 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 164240 CCCTGCCCTTTGTA 164227 >seq10 Length=1797577 Score = 199 bits (220), Expect = 7e-49 Identities = 238/314 (76%), Gaps = 13/314 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG--CTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||||||||||||| ||| | || || || || | | ||| |||| | Sbjct 578595 GAACGAGACCTTAACCTGCTATTTAGTC--GCTCGGTCTCTGTCCGTGCGCA--CTTCAT 578540 Query 78 AGAGGGACTAT-CGGC-TCAAGCCGATG-GAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||| | |||| |||||| | | || |||| ||||||||||||||||||||||| Sbjct 578539 AGAGGGACTCTGCGGCGTCAAGCTGCGGTGAGGTTTAAGGCAATAACAGGTCTGTGATGC 578480 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||| |||||| |||||||||||||||||| | || ||| | ||| Sbjct 578479 CCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGATGCTTGCCTCGTGTT--TACCCTC 578422 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| ||| | ||||| | || || ||||| | ||||| || | ||||||| Sbjct 578421 GGCCGATAGGCCCTGGTAACC--CCTAGTCTGCATCGTGTTTGGGATTGATCTTTGCAAT 578364 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | | | || | |||||||||||||||||| |||| ||||||||| | | |||||||| Sbjct 578363 TCTAGATCATGAACGAGGAATGCCTAGTATGCGCAAGTCATCAGCTTGTGCAGATTACGT 578304 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 578303 CCCTGCCCTTTGTA 578290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199867392