Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 315 2e-83 seq9 315 2e-83 >seq10 Length=1797577 Score = 315 bits (348), Expect = 2e-83 Identities = 375/501 (75%), Gaps = 61/501 (12%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 ||| ||||||||| || | | ||||| |||| |||||| ||||||||||||||| | Sbjct 579329 CATGCCAATTACA-GAGC---AGTAGCCCCGTATTGGTATTTCTTGTCACTACCTCCCTG 579384 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 |||| |||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 579385 TGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTCTCGCA 579444 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 |||||||||||||||||||||||||||||||||||||||||| ||| || || |||||| Sbjct 579445 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCGATGCCTCGGGAGGCCA 579504 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245 || |||||| || ||| |||| || |||||| ||||||| | |||| ||| Sbjct 579505 ATACCCTACCGTC--AAGCTGATGGGTCAGAAACTTGAATGGAATATCG------CAA-- 579554 Query 246 CCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTT 305 | |||| ||| | |||| | | ||||| |||| || || ||| Sbjct 579555 -AAAGCGAGTCG-CAGGTTACTGTAAATCA-CAAG--ACCAGTAAACGCG---------- 579599 Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 |||||| ||| | || | ||||||||| | ||||| Sbjct 579600 --GTAATAA-------CCT--CAAA--------------CGTGTATTAGCCACACAATTA 579634 Query 366 CCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAGCC 423 | |||||||||| ||| || || ||| |||| |||| ||||||| | ||||||||| Sbjct 579635 GCGCGGTTATCCA--TAGCAAAGTGAACT-CCAAAGAAACTATAACTGTTGTAATGAGCC 579691 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||||||||||| ||| | | ||| ||||||||||||||||||||| ||||| ||| Sbjct 579692 ATTCGCAGTTTCACCGTA-ACA-AGCTGGTACTTAGACATGCATGGCTTAGTCTTTAAGA 579749 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 579750 CAAGCATATGACTACTGGCAG 579770 >seq9 Length=2593320 Score = 315 bits (348), Expect = 2e-83 Identities = 375/501 (75%), Gaps = 61/501 (12%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 ||| ||||||||| || | | ||||| |||| |||||| ||||||||||||||| | Sbjct 165264 CATGCCAATTACA-GAGC---AGTAGCCCCGTATTGGTATTTCTTGTCACTACCTCCCTG 165319 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 |||| |||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 165320 TGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTCTCGCA 165379 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 |||||||||||||||||||||||||||||||||||||||||| ||| || || |||||| Sbjct 165380 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCGATGCCTCGGGAGGCCA 165439 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245 || |||||| || ||| |||| || |||||| ||||||| | |||| ||| Sbjct 165440 ATACCCTACCGTC--AAGCTGATGGGTCAGAAACTTGAATGGAATATCG------CAA-- 165489 Query 246 CCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTT 305 | |||| ||| | |||| | | ||||| |||| || || ||| Sbjct 165490 -AAAGCGAGTCG-CAGGTTACTGTAAATCA-CAAG--ACCAGTAAACGCG---------- 165534 Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 |||||| ||| | || | ||||||||| | ||||| Sbjct 165535 --GTAATAA-------CCT--CAAA--------------CGTGTATTAGCCACACAATTA 165569 Query 366 CCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAGCC 423 | |||||||||| ||| || || ||| |||| |||| ||||||| | ||||||||| Sbjct 165570 GCGCGGTTATCCA--TAGCAAAGTGAACT-CCAAAGAAACTATAACTGTTGTAATGAGCC 165626 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||||||||||| ||| | | ||| ||||||||||||||||||||| ||||| ||| Sbjct 165627 ATTCGCAGTTTCACCGTA-ACA-AGCTGGTACTTAGACATGCATGGCTTAGTCTTTAAGA 165684 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 165685 CAAGCATATGACTACTGGCAG 165705 Score = 309 bits (342), Expect = 9e-82 Identities = 374/501 (75%), Gaps = 61/501 (12%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 ||| ||||||||| || | | ||||| |||| |||||| ||||||||||||||| | Sbjct 294047 CATGCCAATTACA-GAGC---AGTAGCCCCGTATTGGTATTTCTTGTCACTACCTCCCTG 294102 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 |||| |||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 294103 TGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTCTCGCA 294162 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 |||||||||||||||||||||||||||||||||||||||||| ||| || || |||||| Sbjct 294163 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCGATGCCTCGGGAGGCCA 294222 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245 || |||||| || ||| |||| || |||||| ||||||| | |||| ||| Sbjct 294223 ATACCCTACCGTC--AAGCTGATGGGTCAGAAACTTGAATGGAATATCG------CAA-- 294272 Query 246 CCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTT 305 | |||| ||| | |||| | | ||||| |||| || || ||| || Sbjct 294273 -AAAGCGAGTCG-CAGGTTACTGTAAATCA-CAAG--ACCAGTAAACGCG--GG------ 294319 Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 ||| |||| | | | ||||||||| | ||||| Sbjct 294320 -------AAA---ACCC-----------------TCAAACGTGTATTAGCCACACAATTA 294352 Query 366 CCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAGCC 423 | |||||||||| ||| || || ||| |||| |||| ||||||| | ||||||||| Sbjct 294353 GCGCGGTTATCCA--TAGCAAAGTGAACT-CCAAAGAAACTATAACTGTTGTAATGAGCC 294409 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||||||||||| ||| | | ||| ||||||||||||||||||||| ||||| ||| Sbjct 294410 ATTCGCAGTTTCACCGTA-ACA-AGCTGGTACTTAGACATGCATGGCTTAGTCTTTAAGA 294467 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 294468 CAAGCATATGACTACTGGCAG 294488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399788544