Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq54 181 4e-43 seq395 89.7 2e-15 >seq54 Length=10339 Score = 181 bits (200), Expect = 4e-43 Identities = 213/283 (75%), Gaps = 15/283 (5%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 3818 CCCGTCTTGAAACACGGACCAAGGAGTCTATCACCCGTGCGAGTGCCTGGGTGTCAAACC 3759 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC---CGTGAGGGTG----CACCATCG 520 | ||||||||||||||| | | | || || || ||| || ||| | || || Sbjct 3758 CTCGCGCGTAATGAAAGTAAGAGCATGTTGG--CCTTGCGTTAGCGTGGCCTCTCCTGCG 3701 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||| || | || || | | | | | ||||| | || | |||||||||||| Sbjct 3700 GCCGGC---GACCTTTT-GGTTCG--TCGCGCTTGAGCACGGTTGCTAGGACCCGAAAGA 3647 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 |||||||||||||||| |||| ||||| ||| |||| ||| |||||| ||||||| Sbjct 3646 TGGTGAACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCAGCGA 3587 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| ||| ||||||||||||||| Sbjct 3586 TACTGACGTGCAAATCGTTCGTCGAATCTGGGTATAGGGGCGA 3544 Score = 132 bits (146), Expect = 2e-28 Identities = 131/168 (78%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| |||||| Sbjct 4197 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGGCTTCTCATAAGACTAAAT 4138 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| |||| ||||||||||||| ||| ||||| Sbjct 4137 ACTGGTGTGAGACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGGAA 4078 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| ||||| || |||||||| |||||||||||| ||| ||| Sbjct 4077 AGAGTGTT-AAAAGTACCTGAAATTGCTGAAAGGGAAGCAATTGGAAC 4031 >seq395 Length=1074093 Score = 89.7 bits (98), Expect = 2e-15 Identities = 92/118 (78%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG-AAGCCAGA 613 ||||| | || | |||||||||||| |||||||||||||| |||| || ||| ||| Sbjct 641983 GAGCACGGTTGCTAGGACCCGAAAGAGTGTGAACTATGCCTGGGTAGGATGAAAGTCAGG 641924 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC--GTCAAATTT 669 |||| ||| |||||| ||||||| | ||| ||||||||||| || ||| ||||| Sbjct 641923 CGAAAGCCTGATGGAGGTCCGCAGCGATACTGACGTGCAAATCGTTCGGGTCGAATTT 641866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079988974700