Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq54 374 1e-101 seq395 316 3e-84 seq308 77.0 6e-12 >seq54 Length=10339 Score = 374 bits (414), Expect = 1e-101 Identities = 261/293 (89%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||| | | | || ||||||||||||||||||||||||||||||||| Sbjct 1466 TACTAGGTGGAATTACTTTAGCGACG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1524 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||| ||||||||||||| || ||| || Sbjct 1525 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACACTTTGAGA 1584 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1585 CTTCTGCATCTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1644 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1645 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCCG 1704 Query 241 CAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||| | ||| ||||| ||||||||||||||||| ||| || ||||||||| Sbjct 1705 CAAGTCTCG-CGGACTCAAAGGATCGATAGGCCATGCTTACACAGTTTGTATT 1756 >seq395 Length=1074093 Score = 316 bits (350), Expect = 3e-84 Identities = 235/267 (88%), Gaps = 7/267 (3%) Strand=Plus/Plus Query 29 GGTCATCAGTAGGGT-AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 ||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 639818 GGTCATCAGTAAGGTTAAAACTAACCTGTCTCACGACG-TCTAAACCCAGCTCACGTTCC 639876 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 ||||||| ||||||||||||| || ||| || |||||| || |||||||||||||| Sbjct 639877 CTATTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCATCTCAATGATAGGAAGAGC 639936 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 639937 CGAAATCGAAGGATCAAAAAGCAAC-TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 639995 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT--AAAGGATCG 265 ||||||||||||||||||| ||||||||||| ||| | ||| ||||| |||||||| Sbjct 639996 TCCCTGTGGTAACTTTTCT-ACACCTCTAGCCGCAAGTCTCG-CGGACTCACAAGGATCG 640053 Query 266 ATAGGCCACACTTTCATGGTTTGTATT 292 |||||||| ||| || ||||||||| Sbjct 640054 ATAGGCCATGCTTACACAGTTTGTATT 640080 >seq308 Length=7711 Score = 77.0 bits (84), Expect = 6e-12 Identities = 128/183 (70%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||| |||| ||| |||||||||||||| || ||| ||||||||||| Sbjct 6507 ACCAAACTGTCTTGCGACGTTCTGAACCCAGCTCACGTACCGCTTTATTGGGTGAACAAA 6566 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||| ||| ||| |||| ||||| | ||| || |||||||||||| | || Sbjct 6567 CCAACCCTTGAAACCTTATTCAGCTTC---AGGATGCGATAAGCCGACATCGAGGTGCCA 6623 Query 164 AAAAGCAACGTCGCTATGAA--CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 || | |||| ||| || | || | | ||||| ||||||||| |||||| Sbjct 6624 AACCTCCCCGTCAATATCAAATCTCTCAAGGGAGATAAGCCTGTTATCCCTAGAGTAACT 6683 Query 222 TTT 224 ||| Sbjct 6684 TTT 6686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395608384