Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq54 562 1e-157 seq395 439 8e-121 >seq54 Length=10339 Score = 562 bits (622), Expect = 1e-157 Identities = 445/530 (84%), Gaps = 23/530 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||||||| ||| ||||| | |||| ||||||||||||||| Sbjct 1791 CTTTTGGTCAACGTGAGATTTCTGTCCTCACTGAGTTCGCCTTGGGACACCTGCGTTATC 1850 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||| ||||||||||||||| | ||||| || || | Sbjct 1851 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTTCCGCCAAAGTT 1910 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-- 184 ||| | ||||| | | | ||||| | || | ||| | |||| Sbjct 1911 GGC-------GAACCTTGATTCT-GTAAATGCTAC-TGCA-------TCCT-TACATTAC 1953 Query 185 -GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||| || | ||| ||||||||||||||||||| || ||| | ||||||| Sbjct 1954 GGAATAAGCAAGACAACATCAAGGGTAGTGGTATTTCACGGTCGGCGA---GCCTCCCAC 2010 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||||||||||| |||||||| | |||||||| ||||||||||| ||||||||||||||| Sbjct 2011 CTATTCTACACCCCTCAAGTCGTCTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTC 2070 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | || Sbjct 2071 TTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAG 2130 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2131 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 2190 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2191 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 2250 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2251 TCACCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 2300 >seq395 Length=1074093 Score = 439 bits (486), Expect = 8e-121 Identities = 433/534 (81%), Gaps = 38/534 (7%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||| ||| ||| ||||| | |||| ||||||||||||||| Sbjct 640114 CTTTTGGTCAACGTGAGATTT-TGTCCTCACTGAGTTCGCCTTGGGACACCTGCGTTATC 640172 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||| ||||| ||||||||| ||||||||| ||||| | || || || || | Sbjct 640173 TTTTAAACGATGTACCGCCCCAGTCAAACTCCCAACCTGGCTAT-TCTTCCGCCAAAGTT 640231 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-G 185 ||| | ||||| | | | ||||| | || | ||| | |||| | Sbjct 640232 GGC-------GAACCTTGATTCT-GTAAATGCTAC-TGCA-------TCCT-TACATTAG 640274 Query 186 ATTAAGTaaaaaaaCGAT--AAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 ||| || | ||| || ||||||||||||||| ||| | | ||| | ||||||| Sbjct 640275 CATAAC-AAGACAAC-ATCAAAGGGTAGTGGTATT-CACG-GTGGCGA---GCCTCCCAC 640327 Query 244 TTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||||||||| ||||| ||| | |||||||| ||||||||||| ||||||||||||| Sbjct 640328 CTATTCTACACC-CTCAAAGTCGTCTCACAAAGCCGGACTAGAGTAGAGCTCAACAGGGT 640386 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT-GTGGTTTCGCTAGATAGT 361 |||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||| | Sbjct 640387 CTTCTT-CCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTTGTGGGTTCGCTAGATGGC 640445 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC-TAATTAGATGACGA 420 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 640446 AGATAGG-ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACATAATTAGATGACGA 640504 Query 421 GGCATTTGGCTACCT-TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| Sbjct 640505 GGCATTTGGCTACCTATAAGAGA-TCATAGTTACTTC-GCCGTTTACCCGCGCTTGGTTG 640562 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 640563 AATTTCACCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 640616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635191595072