Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq237 203 1e-49 seq156 203 1e-49 seq155 203 1e-49 >seq237 Length=221212 Score = 203 bits (224), Expect = 1e-49 Identities = 222/290 (77%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 401 TAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG 460 ||| || ||||||||| |||||||||||||||||||| || || |||||||||||||| Sbjct 217236 TAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACCTGTGCGAGTGTTTGGGCT 217295 Query 461 TCAAACCCGTGCGCGTAATGAAAGTGA----ACGGAGG--TGGGAACCCGTGAGGGT-GC 513 || ||||| |||| ||||||||||| | ||| | ||||| | | || || Sbjct 217296 GAAACCCCGTACGCGAAATGAAAGTGATAACAGGGATGCGTGGGATTTTTTCCGCGTTGC 217355 Query 514 ACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACC 573 ||| | |||| || | ||| ||| | ||||| |||||||| || | ||||| Sbjct 217356 ACCTGTGGCCGA-CCGCAAGTCG-CGGCT-----TGAGTCAGAGCATATGTGCTAGGACC 217408 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||| ||||| ||| |||| ||| |||||| | Sbjct 217409 CGAAAGATGGTGAACTATGCCTGAGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCC 217468 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 217469 GTCGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 217518 Score = 114 bits (126), Expect = 5e-23 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || || | || | | | |||||||| ||| |||||| Sbjct 216842 GAGTCGTGCTCTTTGGGATTGGAGTGCAAATAGTGTGATAAATTTCACATAAGACTAAAT 216901 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| | ||||| |||| ||||||||||||| |||||| || Sbjct 216902 ACTGGTGTGAGACCGATAGCTAATAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 216961 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 |||| ||| ||||| || ||||| || ||| | ||||||| ||| |||| Sbjct 216962 AGAGGGTT-AAAAGTACCTGAAACTGCTGAGAAGGAAGCGATTGGGACCA 217010 >seq156 Length=19347 Score = 203 bits (224), Expect = 1e-49 Identities = 222/290 (77%), Gaps = 14/290 (5%) Strand=Plus/Minus Query 401 TAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG 460 ||| || ||||||||| |||||||||||||||||||| || || |||||||||||||| Sbjct 14182 TAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACCTGTGCGAGTGTTTGGGCT 14123 Query 461 TCAAACCCGTGCGCGTAATGAAAGTGA----ACGGAGG--TGGGAACCCGTGAGGGT-GC 513 || ||||| |||| ||||||||||| | ||| | ||||| | | || || Sbjct 14122 GAAACCCCGTACGCGAAATGAAAGTGATAACAGGGATGCGTGGGATTTTTTCCGCGTTGC 14063 Query 514 ACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACC 573 ||| | |||| || | ||| ||| | ||||| |||||||| || | ||||| Sbjct 14062 ACCTGTGGCCGA-CCGCAAGTCG-CGGCT-----TGAGTCAGAGCATATGTGCTAGGACC 14010 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||| ||||| ||| |||| ||| |||||| | Sbjct 14009 CGAAAGATGGTGAACTATGCCTGAGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCC 13950 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 13949 GTCGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 13900 Score = 114 bits (126), Expect = 5e-23 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || || | || | | | |||||||| ||| |||||| Sbjct 14576 GAGTCGTGCTCTTTGGGATTGGAGTGCAAATAGTGTGATAAATTTCACATAAGACTAAAT 14517 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| | ||||| |||| ||||||||||||| |||||| || Sbjct 14516 ACTGGTGTGAGACCGATAGCTAATAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 14457 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 |||| ||| ||||| || ||||| || ||| | ||||||| ||| |||| Sbjct 14456 AGAGGGTT-AAAAGTACCTGAAACTGCTGAGAAGGAAGCGATTGGGACCA 14408 >seq155 Length=11303 Score = 203 bits (224), Expect = 1e-49 Identities = 222/290 (77%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 401 TAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG 460 ||| || ||||||||| |||||||||||||||||||| || || |||||||||||||| Sbjct 5166 TAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACCTGTGCGAGTGTTTGGGCT 5225 Query 461 TCAAACCCGTGCGCGTAATGAAAGTGA----ACGGAGG--TGGGAACCCGTGAGGGT-GC 513 || ||||| |||| ||||||||||| | ||| | ||||| | | || || Sbjct 5226 GAAACCCCGTACGCGAAATGAAAGTGATAACAGGGATGCGTGGGATTTTTTCCGCGTTGC 5285 Query 514 ACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACC 573 ||| | |||| || | ||| ||| | ||||| |||||||| || | ||||| Sbjct 5286 ACCTGTGGCCGA-CCGCAAGTCG-CGGCT-----TGAGTCAGAGCATATGTGCTAGGACC 5338 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||| ||||| ||| |||| ||| |||||| | Sbjct 5339 CGAAAGATGGTGAACTATGCCTGAGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCC 5398 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 5399 GTCGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 5448 Score = 114 bits (126), Expect = 5e-23 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || || | || | | | |||||||| ||| |||||| Sbjct 4772 GAGTCGTGCTCTTTGGGATTGGAGTGCAAATAGTGTGATAAATTTCACATAAGACTAAAT 4831 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| | ||||| |||| ||||||||||||| |||||| || Sbjct 4832 ACTGGTGTGAGACCGATAGCTAATAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 4891 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 |||| ||| ||||| || ||||| || ||| | ||||||| ||| |||| Sbjct 4892 AGAGGGTT-AAAAGTACCTGAAACTGCTGAGAAGGAAGCGATTGGGACCA 4940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079994637500