Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq237 598 1e-168 seq156 598 1e-168 seq155 598 1e-168 >seq237 Length=221212 Score = 598 bits (662), Expect = 1e-168 Identities = 451/526 (86%), Gaps = 15/526 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||| ||| |||| |||||||||| ||||||||| Sbjct 219277 CTTTTGGTCTACATGAGATTTCTGTCCTCATTGAGCTTGCCTTAGGACATCTGCGTTATC 219218 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||| ||||||||||| ||| | ||||| || || |||| Sbjct 219217 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCATCTGGCTATGTCTTCCGCCTAGATC 219158 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||| ||| |||||| | | || | | ||| | ||| | | | || Sbjct 219157 GGCA----AAG--CCTTAAGTCAAAAACA----CCCAAAAGCGAATTTCAACATAACGGA 219108 Query 187 TTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 ||||||||| || || || |||||||||||||||| ||||||| |||||||||| Sbjct 219107 ATAAGTAAAACGAC-ATCGGGAGTAGTGGTATTTCACTGTCGCCGAA---GCTCCCACTT 219052 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| | || |||||||||||| ||||||||||| ||||||||||||||||| Sbjct 219051 ATGCTACACCTCCCGAGCCATTTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTCTT 218992 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 218991 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGAT 218932 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218931 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 218872 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218871 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 218812 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 218811 ATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 218766 >seq156 Length=19347 Score = 598 bits (662), Expect = 1e-168 Identities = 451/526 (86%), Gaps = 15/526 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||| ||| |||| |||||||||| ||||||||| Sbjct 12141 CTTTTGGTCTACATGAGATTTCTGTCCTCATTGAGCTTGCCTTAGGACATCTGCGTTATC 12200 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||| ||||||||||| ||| | ||||| || || |||| Sbjct 12201 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCATCTGGCTATGTCTTCCGCCTAGATC 12260 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||| ||| |||||| | | || | | ||| | ||| | | | || Sbjct 12261 GGCA----AAG--CCTTAAGTCAAAAACA----CCCAAAAGCGAATTTCAACATAACGGA 12310 Query 187 TTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 ||||||||| || || || |||||||||||||||| ||||||| |||||||||| Sbjct 12311 ATAAGTAAAACGAC-ATCGGGAGTAGTGGTATTTCACTGTCGCCGAA---GCTCCCACTT 12366 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| | || |||||||||||| ||||||||||| ||||||||||||||||| Sbjct 12367 ATGCTACACCTCCCGAGCCATTTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTCTT 12426 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 12427 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGAT 12486 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12487 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 12546 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12547 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 12606 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 12607 ATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 12652 >seq155 Length=11303 Score = 598 bits (662), Expect = 1e-168 Identities = 451/526 (86%), Gaps = 15/526 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||| ||| |||| |||||||||| ||||||||| Sbjct 7207 CTTTTGGTCTACATGAGATTTCTGTCCTCATTGAGCTTGCCTTAGGACATCTGCGTTATC 7148 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||| ||||||||||| ||| | ||||| || || |||| Sbjct 7147 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCATCTGGCTATGTCTTCCGCCTAGATC 7088 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||| ||| |||||| | | || | | ||| | ||| | | | || Sbjct 7087 GGCA----AAG--CCTTAAGTCAAAAACA----CCCAAAAGCGAATTTCAACATAACGGA 7038 Query 187 TTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 ||||||||| || || || |||||||||||||||| ||||||| |||||||||| Sbjct 7037 ATAAGTAAAACGAC-ATCGGGAGTAGTGGTATTTCACTGTCGCCGAA---GCTCCCACTT 6982 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| | || |||||||||||| ||||||||||| ||||||||||||||||| Sbjct 6981 ATGCTACACCTCCCGAGCCATTTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGGTCTT 6922 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 6921 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGAT 6862 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6861 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 6802 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6801 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 6742 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 6741 ATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 6696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635195912000