Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq125 100 2e-16 seq37 100 2e-16 seq33 100 2e-16 seq32 100 2e-16 >seq125 Length=210264 Score = 100 bits (110), Expect = 2e-16 Identities = 370/577 (64%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| |||| || | || || || |||||||| || || || | || | ||||| ||| Sbjct 51122 ACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTA 51063 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || | ||||| ||| ||| | || || | || || || | |||| ||||| Sbjct 51062 TATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTT 51003 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||| ||| || || |||||||| | |||||| ||||| || || |||| ||| || Sbjct 51002 GACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGAT 50943 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCG 66231 | | ||| || |||||| | | || || || | | ||| | ||||| Sbjct 50942 TGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTT-TGCGACCCATGCCTTTCGA 50884 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 || ||| ||| | | ||| || || ||||| || | || | | ||| Sbjct 50883 CTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACA 50824 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || | ||| ||||||| | ||| | ||| ||| || | ||| || || || Sbjct 50823 CTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTC 50764 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||| | || ||||| | || | || | | |||||| || || ||||| Sbjct 50763 TGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTT 50704 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 || | || ||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 50703 TCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGA 50644 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || | | ||| || || || || || || || ||||| || ||||| | | | Sbjct 50643 ACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAG 50584 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 ||| |||| | ||| || || | ||||| |||||| Sbjct 50583 CATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 50547 >seq37 Length=216676 Score = 100 bits (110), Expect = 2e-16 Identities = 370/577 (64%), Gaps = 2/577 (0%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| |||| || | || || || |||||||| || || || | || | ||||| ||| Sbjct 83034 ACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTA 83093 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || | ||||| ||| ||| | || || | || || || | |||| ||||| Sbjct 83094 TATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTT 83153 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||| ||| || || |||||||| | |||||| ||||| || || |||| ||| || Sbjct 83154 GACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGAT 83213 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCG 66231 | | ||| || |||||| | | || || || | | ||| | ||||| Sbjct 83214 TGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTT-TGCGACCCATGCCTTTCGA 83272 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 || ||| ||| | | ||| || || ||||| || | || | | ||| Sbjct 83273 CTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACA 83332 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || | ||| ||||||| | ||| | ||| ||| || | ||| || || || Sbjct 83333 CTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTC 83392 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||| | || ||||| | || | || | | |||||| || || ||||| Sbjct 83393 TGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTT 83452 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 || | || ||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 83453 TCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGA 83512 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || | | ||| || || || || || || || ||||| || ||||| | | | Sbjct 83513 ACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAG 83572 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 ||| |||| | ||| || || | ||||| |||||| Sbjct 83573 CATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 83609 >seq33 Length=143971 Score = 100 bits (110), Expect = 2e-16 Identities = 370/577 (64%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| |||| || | || || || |||||||| || || || | || | ||||| ||| Sbjct 51122 ACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTA 51063 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || | ||||| ||| ||| | || || | || || || | |||| ||||| Sbjct 51062 TATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTT 51003 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||| ||| || || |||||||| | |||||| ||||| || || |||| ||| || Sbjct 51002 GACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGAT 50943 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCG 66231 | | ||| || |||||| | | || || || | | ||| | ||||| Sbjct 50942 TGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTT-TGCGACCCATGCCTTTCGA 50884 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 || ||| ||| | | ||| || || ||||| || | || | | ||| Sbjct 50883 CTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACA 50824 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || | ||| ||||||| | ||| | ||| ||| || | ||| || || || Sbjct 50823 CTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTC 50764 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||| | || ||||| | || | || | | |||||| || || ||||| Sbjct 50763 TGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTT 50704 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 || | || ||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 50703 TCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGA 50644 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || | | ||| || || || || || || || ||||| || ||||| | | | Sbjct 50643 ACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAG 50584 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 ||| |||| | ||| || || | ||||| |||||| Sbjct 50583 CATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 50547 >seq32 Length=149697 Score = 100 bits (110), Expect = 2e-16 Identities = 370/577 (64%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| |||| || | || || || |||||||| || || || | || | ||||| ||| Sbjct 66664 ACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTA 66605 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || | ||||| ||| ||| | || || | || || || | |||| ||||| Sbjct 66604 TATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTT 66545 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||| ||| || || |||||||| | |||||| ||||| || || |||| ||| || Sbjct 66544 GACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGAT 66485 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCG 66231 | | ||| || |||||| | | || || || | | ||| | ||||| Sbjct 66484 TGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTT-TGCGACCCATGCCTTTCGA 66426 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 || ||| ||| | | ||| || || ||||| || | || | | ||| Sbjct 66425 CTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACA 66366 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || | ||| ||||||| | ||| | ||| ||| || | ||| || || || Sbjct 66365 CTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTC 66306 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||| | || ||||| | || | || | | |||||| || || ||||| Sbjct 66305 TGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTT 66246 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 || | || ||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 66245 TCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGA 66186 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || | | ||| || || || || || || || ||||| || ||||| | | | Sbjct 66185 ACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAG 66126 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 ||| |||| | ||| || || | ||||| |||||| Sbjct 66125 CATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 66089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567321649600