Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq12707 185 1e-44 seq61608 178 2e-42 seq113736 140 4e-31 seq4610 138 2e-30 >seq12707 Length=528 Score = 185 bits (204), Expect = 1e-44 Identities = 192/247 (78%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 450 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGG-CTTCGCAGA 392 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || ||| ||| || |||| |||| Sbjct 391 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTGC--CCCCCAC-AGCTG-- 337 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | || | || || ||||||||||||||||||||||| || |||||||| | Sbjct 336 ---GTTGCCCAAC--CATGGGGCCCCCTTCTCCCGAAGTTACGGGGGCAATTTGCCGAGT 282 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || |||| | | | |||||| |||| ||||||||| ||||||||||||||| Sbjct 281 TCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATACTCTACCTGTCCACCTGTGTCGGTT 222 Query 242 TACGGTA 248 | |||| Sbjct 221 TCGGGTA 215 >seq61608 Length=535 Score = 178 bits (196), Expect = 2e-42 Identities = 192/251 (76%), Gaps = 15/251 (6%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTAC-CGTCTTCGCA 59 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | || ||||||| Sbjct 453 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGCGGCTTCGCA 394 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 | |||||||||||| ||||||||||| ||| || ||| ||| || | Sbjct 393 GAGCCCTGTGTTTTTAATAAACAGTCGCCACCCCCTGGTCTGTGCCCCC----------C 344 Query 120 AACACGTCGTTCACCA--GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || | | ||| ||| || | ||| ||||||||||||||||||||||| || |||||| Sbjct 343 GACCC-TGGTTGCCCAAGGCCGGGGC-CCCCTTCTCCCGAAGTTACGGGGGCAATTTGCC 286 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || |||||| | | |||||| | | | |||||| |||| ||||||| | ||||||||||| Sbjct 285 GAGTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATGCTCTACCAGTCCACCTGTGTC 226 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 225 GGTTTCGGGTA 215 >seq113736 Length=463 Score = 140 bits (154), Expect = 4e-31 Identities = 183/248 (74%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 385 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAGA 327 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC-CACCAGCTCA 120 | |||||||||||| ||||||||||| ||| || ||| ||| | |||||| | Sbjct 326 GCCCTGTGTTTTTAATAAACAGTCGCCACCCCCTGGTCTGTGCCCCTGGACACCAGTTG- 268 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | | ||| || ||| ||||| |||| ||||||| | |||||||| Sbjct 267 ---CCTGATGC-----CAG--GCTCCC-TTCTCGCGAACTTACGGGAGTAATTTGCCGAG 219 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| |||| ||||||| | |||||||||||||| Sbjct 218 TTCCTTCAACAGAGTTCTCTCAAGCGCCTTGGTATGCTCTACCAGTCCACCTGTGTCGGT 159 Query 241 TTACGGTA 248 || |||| Sbjct 158 TTGGGGTA 151 >seq4610 Length=4342 Score = 138 bits (152), Expect = 2e-30 Identities = 179/248 (72%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| || ||||| || || | | || ||| Sbjct 4242 CTTAACCTTCCGGCACCGGGCAGGTGTCAGGCCCTATACGTCATCTCTCGATTTT-GCAG 4184 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || ||| ||||| || || || | Sbjct 4183 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGACCTCTTCACTGCGGCCCCC-CCGG---- 4129 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | ||| ||||||||||||||||||||| |||||||||| | Sbjct 4128 --------------AGGGG-GGCGACCCTTCTCCCGAAGTTACGGGTCCATTTTGCCTAG 4084 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| |||| || | ||| |||||| | ||||||| || |||||||||||||||| Sbjct 4083 TTCCTTGACCATGAATCTCTCGAGCGCCTTGGAATTCTCTTCCCGACCACCTGTGTCGGT 4024 Query 241 TTACGGTA 248 |||||||| Sbjct 4023 TTACGGTA 4016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693413216370