Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4610 331 3e-88 seq42531 316 7e-84 seq141111 291 3e-76 seq141112 143 1e-31 seq105679 118 4e-24 >seq4610 Length=4342 Score = 331 bits (366), Expect = 3e-88 Identities = 411/550 (75%), Gaps = 31/550 (6%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| | | |||| || ||| |||||| ||| |||| ||| Sbjct 3378 GCATTCGGAGTTTGTCGGGAATTGGTAGGCG-GTGAAGCCCCCGCATCCAATCAGTAGCT 3320 Query 112 CTACCTCCGGGAAG--AAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 ||||||| ||| || || |||||||||||||||||||||||||||| || ||| Sbjct 3319 CTACCTCTATGAAACTAATAAC---ACGCTGCACCTAAATGCATTTCGGGGAGTACGAGC 3263 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | || ||||||||||||||||||||| |||||||||||||| | |||||||| Sbjct 3262 TATTTCCGAGCTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCCAAGACTTTTCAAC 3203 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | | |||||||| ||||||| || ||||| |||||| ||||||||||| ||||| Sbjct 3202 GTCAACGGGTTCGGCCCTCCACTATGTGTTACCACAGCTTCAGCCTGCCCATGGGTAGAT 3143 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCA-TA---CGCCCTATTCGGACTCGCTTTC 345 | | | |||| ||| | | ||||| | || |||||| || ||||||||||| Sbjct 3142 CGCACGGTTTCGCGTC----TACTACCACTAACTAAAGCGCCCTGTTAAGACTCGCTTTC 3087 Query 346 GCTACGGCTACCCCACACGGG----TTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401 ||| ||||| || || | | |||||||||| | || | |||||| ||||||| Sbjct 3086 GCTGCGGCT-CCGGACCTGAGGCCCTTAACCTCGCTAGTGAAAG-TAACTCGTAGGCTCA 3029 Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461 || | ||||||||||||||||| | | || ||| ||||||| | |||| Sbjct 3028 TTATGCAAAAGGCACGCCGTCATCCG---CC-----GGCTGGCGGACTCCGACCGCTTGT 2977 Query 462 AGGCACATGGTTTCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCT 520 |||| ||||||||||| || ||||||||||| | ||||| |||||||||||||||| Sbjct 2976 AGGCGTATGGTTTCAGGGTCTGTTTCACTCCCCTGTTCGGGGTTCTTTTCACCTTTCCCT 2917 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 ||||||||| || | ||||||||| || |||||||||||| ||| ||| |||||||||| Sbjct 2916 CACGGTACTGGTACACTATCGGTCTCCCAGGAGTATTTAGCCTTGGCGGATGGTCCCGCC 2857 Query 581 AGATTCACAC 590 | ||| ||| Sbjct 2856 GGGTTCGCAC 2847 >seq42531 Length=1504 Score = 316 bits (350), Expect = 7e-84 Identities = 345/450 (77%), Gaps = 20/450 (4%) Strand=Plus/Minus Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 ||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||| Sbjct 1499 TTTCGCGGAGAACCAGCTATCTCCGGGTTTGATTGGCCTTTCACCCCTAACCACAGGTCA 1440 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAA 272 ||||| |||||||| | |||||||||| |||||| ||| |||||| ||||| Sbjct 1439 TCCCCGTTCTTTTCAACGAACGTGGGTTCGGCCCTCCAGTGGGTGTTACCCCACCTTCAG 1380 Query 273 CCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC-CACTCATACGCCCTAT 331 ||||||||||| |||||||| | |||||||| ||||| | ||| | ||||||| | Sbjct 1379 CCTGCCCATGGCTAGATCACCCGGTTTCGGGTC-TGATCCCACGAACTGA-ACGCCCTGT 1322 Query 332 TCGGACTCGCTTTCGCTACGGCTACCCCACA-CGGGTTAACCTCGCGACACAACGCAAAC 390 || |||||||||||||| || |||| || || ||| |||| || || | || | ||| Sbjct 1321 TCAGACTCGCTTTCGCTGCGCCTACACCTCATCGGCTTAAGCTTGC-TCGTAAGACCAAC 1263 Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| | | |||| | ||||||| |||||||||| ||| || |||| Sbjct 1262 TCGCTGACCCATTATGCAAAAGGTACGCCGTCAC------CCT----TGC----GGGCTC 1217 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTT 509 |||| ||||||||||| ||||||||| || ||||||||||| | ||||| ||||| Sbjct 1216 CGACTGATTGTAGGCATTCGGTTTCAGGGTCTCTTTCACTCCCCTCGTCGGGGTGCTTTT 1157 Query 510 CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGG 569 ||||||||||||||||||||||| | |||||||| | ||||||| |||| ||| || Sbjct 1156 CACCTTTCCCTCACGGTACTTGTTCACTATCGGTTGTCGAGGAGTACTTAGCCTTGGAGG 1097 Query 570 GTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| ||| |||| || |||||| Sbjct 1096 GTGGTCCCCCCATGTTCAGACAGGATTTCA 1067 >seq141111 Length=1569 Score = 291 bits (322), Expect = 3e-76 Identities = 331/438 (76%), Gaps = 16/438 (4%) Strand=Plus/Minus Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 ||||| ||||||||||||||| | ||||||||||||||||||||||| ||||| |||| Sbjct 1564 TTTCGCGGAGAACCAGCTATCTCCGGGTTTGATTGGCCTTTCACCCCTAACCACAAGTCA 1505 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAA 272 |||| | |||||||| ||||||||||| ||| || ||| |||||| || || Sbjct 1504 TCCCGTAGCTTTTCAACGCTAGTGGGTTCGGCCCTTCAGTGGGTGTTACCCCACCTGCAG 1445 Query 273 CCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC-CACT-CATACGCCCTA 330 ||||| ||||| |||||||| | |||||||| | ||| | | ||| | ||||||| Sbjct 1444 CCTGCTCATGGCTAGATCACCCGGTTTCGGGTC-TAATCCTACGAACTGAAGTCGCCCTA 1386 Query 331 TTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAAC 390 || ||||||||||||||||| |||| || |||| |||| || || | || ||| Sbjct 1385 TTAAGACTCGCTTTCGCTACGCCTACACCTAACGGCTTAAGCTTGC-TCGTAAAATTAAC 1327 Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| | | |||| | ||||||| |||| ||||| | || || | |||| Sbjct 1326 TCGCTGACCCATTATACAAAAGGTACGCGGTCAC-----ATCTCAAGG------ATGCTC 1278 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTT 509 | || ||||||||||| ||||||||| || ||||||||||| | ||||| ||||| Sbjct 1277 CCACAGATTGTAGGCATTCGGTTTCAGGCTCTCTTTCACTCCCCTCATCGGGGTGCTTTT 1218 Query 510 CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGG 569 |||||||||||||||||||| || | ||||||||| | ||||||| |||||||| || Sbjct 1217 CACCTTTCCCTCACGGTACTGGTTCACTATCGGTCGCACAGGAGTACTTAGGCTTGGAGG 1158 Query 570 GTGGTCCCGCCAGATTCA 587 |||||||| ||| |||| Sbjct 1157 GTGGTCCCCCCACGTTCA 1140 >seq141112 Length=563 Score = 143 bits (158), Expect = 1e-31 Identities = 150/193 (78%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| ||||| |||| | |||| |||| | |||| ||||| ||| ||| ||||| Sbjct 190 TCGACCACGGACCTTAG-CACCCGTGGTCTGTCTGCCGAGCTCT-ACTCTTCGGTATTCG 133 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 |||||||||| || ||||||| | |||||||||| ||||||||||||||||| || Sbjct 132 GAGTTTGGTTAGGTTTGGTAAGCCTCGCGGCCCCCTAGCCCATCCAGTGCTCTACC-CCC 74 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 | | | || || |||||| |||||||| ||||| ||||||||||||||| | || Sbjct 73 GAAGGTAATACTCGACGCACTACCTAAATAGTTTTCGCGGAGAACCAGCTATCTCCGGGT 14 Query 181 TTGATTGGCCTTT 193 ||||||||||||| Sbjct 13 TTGATTGGCCTTT 1 >seq105679 Length=553 Score = 118 bits (130), Expect = 4e-24 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 46 ACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCC 105 ||||| ||| ||||||||||||||| || |||||| | | |||||||| |||||| Sbjct 148 ACTTCTCGGTATTCGGAGTTTGGTTAGGTTTGGTAAGGCTCGCGCCCCCCTAGCCCATCC 89 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || | || ||||| |||||||| ||||| ||||||| Sbjct 88 AGTGCTCTACCCCCGAGAGCCACCATCTGACGCACTACCTAAATAGTTTTCGCGGAGAAC 29 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTT 193 |||||||| | ||||||||||||||| Sbjct 28 CAGCTATCTCCGGGTTTGATTGGCCTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1814933762560