Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq141111 336 5e-90 seq42531 331 2e-88 seq4610 255 1e-65 >seq141111 Length=1569 Score = 336 bits (372), Expect = 5e-90 Identities = 333/415 (80%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||| || ||||| ||||| |||| ||||||| ||| |||| || ||| Sbjct 1514 CCACAAGTCATCCCG-TAGCTTTT-CAACGCTAGTGGGTTCGGCCCTTCAGTGGGT-GTT 1458 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| |||| || ||||| ||| || |||||| |||||||| |||||||| | || | Sbjct 1457 ACCCCACCTG-CAGCCTGCTCAT-GGCTAGATCACCCGGTTT-CGGGTCTAAT-CCTACG 1402 Query 129 GACT--AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCT 185 ||| || ||||||| ||||||||||||| |||||||||| | |||| | ||||||| Sbjct 1401 AACTGAAGTCGCCCTATTAAGACTCGCTTT-CGCTACGCCTACACCTAACGGCTTAAGCT 1343 Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG 245 | || | ||| ||| |||||||||||||||||||||||||||| ||||| ||| | Sbjct 1342 T-GCTCGTAAAATTAACTCGCTGACCCATTATACAAAAGGTACGCGGTCACATCTCAAGG 1284 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | ||||||| | ||||| |||| |||||||||| ||| ||||||||||||| ||||| Sbjct 1283 ATG-CTCCCACAGATTGTAGGCATTCGGTTTCAGGCTCTCTTTCACTCCCCTCATCGGGG 1225 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 | |||||| |||||||||||||||||| |||||||||||||| ||| |||| |||| | Sbjct 1224 TGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCGCACAGGAGTACTTAGGC 1165 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| ||||||||||| ||||| || |||| |||| ||| |||||||| Sbjct 1164 TTGGAGGGTGGTCCCCCCACGTTCAGGCAGGATTTCACGTGTCCCGCCCTACTCG 1110 >seq42531 Length=1504 Score = 331 bits (366), Expect = 2e-88 Identities = 332/415 (80%), Gaps = 17/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| || | ||||||||| || ||||||| |||||||| || ||| Sbjct 1449 CCACAGGTCATCCCCGTTC--TTTTCAACGAACGTGGGTTCGGCCCTCCAGTGGGT-GTT 1393 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| ||||| || ||||||||| || |||||| |||||||| ||||||| | |||| Sbjct 1392 ACCCCACCTT-CAGCCTGCCCAT-GGCTAGATCACCCGGTTT-CGGGTCTGAT-CCCACG 1337 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGG-TTAAGCTT 186 ||| ||||||| | ||||||||||| |||| ||||| | ||| |||| |||||||| Sbjct 1336 AACTGAACGCCCTGTTCAGACTCGCTTT-CGCTGCGCCTACACCTCATCGGCTTAAGCTT 1278 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 || | | | || ||||||||||||||| |||||||||||| ||||||| | Sbjct 1277 -GCTCGTAAGACCAACTCGCTGACCCATTATGCAAAAGGTACGCCGTCACCCTT----GC 1223 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||| |||| ||||| |||| |||||||||| ||| ||||||||||||| |||||| Sbjct 1222 GGGCTCCGACTGATTGTAGGCATTCGGTTTCAGGGTCTCTTTCACTCCCCTCGTCGGGGT 1163 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTATTTAGCC 365 |||||| |||||||||||||||||| ||||||||||||| ||| || |||| |||||| Sbjct 1162 GCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTT-GTCGAGGAGTACTTAGCC 1104 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| |||||||||||| |||||||| |||| |||| ||| |||||||| Sbjct 1103 TTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 1049 >seq4610 Length=4342 Score = 255 bits (282), Expect = 1e-65 Identities = 316/418 (76%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| || | ||||||||| | ||||||| |||||| | || ||| Sbjct 3229 CCACAGGTCATCCCAAGAC--TTTTCAACGTCAACGGGTTCGGCCCTCCACTATGT-GTT 3173 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | ||| || ||||||||| || |||||||| |||||| || ||||| | || | Sbjct 3172 ACCACAGCTT-CAGCCTGCCCATGGG-TAGATCGCACGGTTT-CGCGTCTACTACC-ACT 3117 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT-ATTCGGTTAAG 183 |||| | |||||| ||||||||||||| |||| || |||| ||| | | |||| Sbjct 3116 AACTAAAGCGCCCTGTTAAGACTCGCTTT-CGCTGCGGCTCCGGACCTGAGGCCCTTAAC 3058 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || || | ||||| ||| ||| | | |||||| ||||||| |||| |||| || | Sbjct 3057 CTC-GCTAGTGAAAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCATCCGCCGG 2999 Query 244 A--GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | || |||| || ||||||| || || ||||||||| ||| |||||||||||| | | Sbjct 2998 CTGGCGGACTCCGACCGCTTGTAGGCGTATGGTTTCAGGGTCTGTTTCACTCCCCTGTTC 2939 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| || ||||||||||| ||| ||||||| Sbjct 2938 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTACACTATCGGTCTCCCAGGAGTATTT 2879 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||| |||||||||| || ||| ||| ||| | ||||| ||| |||||| Sbjct 2878 AGCCTTGGCGGATGGTCCCGCCGGGTTCGCACAGGGTTCCACGTGCCCCGCGCTACTC 2821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239778696960