Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq141112 188 2e-45 seq105679 183 7e-44 seq4610 116 9e-24 seq5547 100 7e-19 >seq141112 Length=563 Score = 188 bits (208), Expect = 2e-45 Identities = 161/199 (81%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAA-----TCACTT 261 || ||||||||| | || ||| ||||||| ||||| ||||||||| | | ||| Sbjct 386 CCGCAGCTTCGGTGTATGGCTTGAGCCCCGGTACATCTTCGGCGCGGGACGGCTTAACTA 327 Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||||| |||||| ||||| |||| |||||||||| ||||||||||||||||| Sbjct 326 GACCAGTGAGCTGTTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTT 267 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 |||| || | ||||||||||||||| || || |||||||| ||||||||| | | Sbjct 266 GTCTTGGCCTTCCTACATCCTTTCCCACTTAGCCATAACTTAGGGACCTTAGCTGGCGGT 207 Query 382 CTGGGCTGTTTCCCTCTCG 400 ||||||||||||||||||| Sbjct 206 CTGGGCTGTTTCCCTCTCG 188 >seq105679 Length=553 Score = 183 bits (202), Expect = 7e-44 Identities = 253/348 (73%), Gaps = 11/348 (3%) Strand=Plus/Minus Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 |||||||||||| |||||| | | ||| ||| | | ||||||||||| | || Sbjct 535 GGAACCCTTGGACTTTCGGCGAGAGTGTTTCTCACACTCTTTATCGCTACTCATGTCAGC 476 Query 122 ATTCTCACTCGCATCAACTCCACCACACAGTCACCCG-GCAGCTTCACCA-CTGACACGA 179 |||| |||| || |||||| | | |||| | || ||||| | | | | | Sbjct 475 ATTCGCACTTGCCATGCCTCCACGGCCCC-TCACGGGTGCCGCTTCGCAGGCCTAGGCAA 417 Query 180 CGCTCCCCTACCCAACCACACAG--GTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGC 237 |||||| ||||| | || || | || ||||||||| | | ||| ||||||| Sbjct 416 CGCTCCGCTACCACTCGTCAGAGACGAGTCCGCAGCTTCGGTGCACGGCTTGAGCCCCGG 357 Query 238 TACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||||| ||||||| | | ||| ||||||||||||||||||| ||||| |||| Sbjct 356 TACATTTTCGGCGCAGGACGGCTTATCTAGACCAGTGAGCTATTACGCTTTCTTTAAAGG 297 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| ||||||||||||||||||||| || ||||||||||||||||| | Sbjct 296 GTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTTGGCCTTCCCACATCCTTTCCCACTTA 237 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | |||| ||| ||||||||| | |||||||||||||||||||| Sbjct 236 GCCGTGACTTGGGGACCTTAGCTGGCGGTCTGGGCTGTTTCCCTCTCG 189 >seq4610 Length=4342 Score = 116 bits (128), Expect = 9e-24 Identities = 271/394 (69%), Gaps = 20/394 (5%) Strand=Plus/Minus Query 20 CGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATC 79 ||| ||||| ||||||| |||| ||| || | | || || |||| |||||| || Sbjct 3813 CGCGTTAGGTCCCGACTGACCCCCGGCTGATTAGCATGGCCGGGGAAACCTTGGTCTTTC 3754 Query 80 GGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACTCGCATCAA 138 ||||| | | ||| | | | | | || |||| |||||| |||| || | ||| | Sbjct 3753 GGCGGCGGTGTTTCTCGCACCGCTTATCGTTACTTATGCCTACATTTTCGTTTGCAGCTC 3694 Query 139 CTCCACCACACAGTCACC-CG-GCAGCTTCACC---ACTGACACGACGCTCCCCTACCCA 193 ||||| | | | || | || || |||| | |||| | | ||||||||||| Sbjct 3693 CTCCAGCGCCCC-TCGCGGCGTGCGCCTTCGGCGGCACTG---CAATGCTCCCCTACCTC 3638 Query 194 ACCACACAGGTTG---CCACAGCTTCGGCGGATAA-CTTAAGCCCCGCTACATTATCGGC 249 | | || | | |||| ||||||| ||| |||| |||| | | ||||||| Sbjct 3637 CCGATACTTATCGGGACCACGGCTTCGGTA-ATATGCTTATGCCC-GAT-CATTATCCAT 3581 Query 250 GCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA-GGATGGCTGCTTCCAAGC 308 |||| | | || |||||||||||| ||||||||||||| || | |||||||||||||||| Sbjct 3580 GCGGGACCGCTCGACCAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGC 3521 Query 309 CAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC--CCACTGAGTCACCACTTAGGG 366 |||| |||||| |||| ||| |||| | |||| | ||| || | || ||| Sbjct 3520 CAACATCCTGGCTGTCGGTGCAGTCCCACCGCGTTTCGTCAACTTAGCATATATTTGGGG 3461 Query 367 GCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| | || || ||| | ||||||||||| Sbjct 3460 ACCTTAGCCGGTGGTCCGGGTTCTTTCCCTCTCG 3427 >seq5547 Length=16686 Score = 100 bits (110), Expect = 7e-19 Identities = 89/110 (81%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 215 TCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTA 274 ||||| ||| ||||| || |||||| | |||| | | ||| ||| ||||||||| Sbjct 15721 TCGGCATATACTTTAAGAACCT-TACATTTGCAGCGCAAACTGACTCGACTAGTGAGCTA 15663 Query 275 TTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||||||||| |||||| |||||||| ||||||||||||| |||||| Sbjct 15662 TTACGCACTCTTTAAAGGATTGCTGCTTCTAAGCCAACCTCCTAGTTGTC 15613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175872578560