Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq303 403 2e-107 seq13327 374 1e-98 >seq303 Length=42796 Score = 403 bits (446), Expect = 2e-107 Identities = 685/986 (69%), Gaps = 10/986 (1%) Strand=Plus/Minus Query 163923 TTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGT 163982 ||| | ||||| || || || |||||| | |||||||| || |||||| | || | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 163983 GGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGT 164042 || || || ||||| || || || || |||||||| | || ||||| || ||||| Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 164043 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGT 164102 || || || ||| |||||| | || || ||||| || ||||| ||| || ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 164103 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAA 164162 || || ||| | ||| ||| ||||| || ||||||| || | | | |||| ||| Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 164163 CTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATG 164222 |||| || | || |||| | || || || || | || | || || || || Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TG 27376 Query 164223 CTTCGG-CAGTTTGAAATTGCACGTCTTGT--AGGTATCCGTCCGTACAATGCTATTGCG 164279 || | || |||||||||||| | | || |||| ||||| || ||||| ||||| Sbjct 27375 TTTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTT--CGTCCATATAATGCAATTGCT 27318 Query 164280 TTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCT 164339 ||| | ||||| ||||| || ||||| || || | || || ||| | || ||| | Sbjct 27317 TTCACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCG 27258 Query 164340 AGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTC 164399 ||||| || ||||| || ||||| || || || || || ||||| | | ||| | Sbjct 27257 AGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTT 27198 Query 164400 CAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTT 164459 ||||| || |||||||| ||||| || || ||||||||||||||||| ||||| || | Sbjct 27197 CAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTA 27138 Query 164460 GGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGAT 164519 || ||||| | | | ||| || ||||| || || ||| | ||||| || | | ||||| Sbjct 27137 GGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGAT 27078 Query 164520 GGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCG 164579 |||| | | || || || || || || ||| ||||||||||| || Sbjct 27077 GGTGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCA 27018 Query 164580 ATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGT 164639 ||||| || || || || || || |||||||||||||| | ||||| || |||||| Sbjct 27017 ATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGT 26958 Query 164640 TGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGT 164699 ||||| || ||||||||| | || || || || | || | || || | || |||| Sbjct 26957 TGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGG 26898 Query 164700 ATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCA 164759 || | ||||| || | ||| | | || || |||||||||||||| ||| | ||||| Sbjct 26897 ATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCA 26838 Query 164760 GCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTC 164819 || || ||||||||||| || ||||| ||||| || || || | || ||||||||| || Sbjct 26837 GCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATC 26778 Query 164820 CGTGCCTGGATGGC--TCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAG 164877 ||||| || ||||| | ||| ||||| || || ||| || | || |||||||||| Sbjct 26777 CGTGCTTGAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAG 26720 Query 164878 TTCTTCCGAGAGGTAACGCACTCTAA 164903 || | || | || || || |||||| Sbjct 26719 TTTTACCTCGCGGAAATGCTCTCTAA 26694 >seq13327 Length=3816 Score = 374 bits (414), Expect = 1e-98 Identities = 654/950 (69%), Gaps = 4/950 (0%) Strand=Plus/Minus Query 160602 CGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCA--ACCG 160659 ||||| || |||| ||||| || | | ||| | ||||| | || |||| | || Sbjct 2795 CGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAGTATCG 2736 Query 160660 TCTGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAAC 160719 | | || ||| |||| || || || || || || || || || || || || ||||| | Sbjct 2735 TGT--TTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 160720 CCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 160779 | ||| | || || || | || ||||| || || ||||| || || || || || || Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 160780 CCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGC 160839 | || || |||||| | || || || | | || || || | | |||| ||||| Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 160840 TCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCT 160899 | || || || || ||||||||| | || ||| | || ||| | ||||| | | | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCAT 2498 Query 160900 ACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTG 160959 | | ||||| ||||| ||| | ||||| | || ||||| || || || | ||| | Sbjct 2497 ATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAG 2438 Query 160960 CATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAG 161019 | | |||||||| ||||| || || || ||||| || || || || |||| |||| Sbjct 2437 CTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAG 2378 Query 161020 GTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCT 161079 | ||||| || ||||| ||||| || || || ||||| || |||||||||||||| || | Sbjct 2377 GATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTAT 2318 Query 161080 TCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCT 161139 |||||||||| || || ||| | |||||||| ||||||||| || || || || || | Sbjct 2317 TCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTAT 2258 Query 161140 TCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTG 161199 | || || ||| | || || |||||||| || | ||||| || | | || | Sbjct 2257 TTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTA 2198 Query 161200 AAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCT 161259 || | ||| | || || | || ||||| || || || || || ||| | || || | Sbjct 2197 TGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACAT 2138 Query 161260 ACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCA 161319 | || ||||| || || || || |||||||| || || ||||| |||| ||| || | Sbjct 2137 ATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTA 2078 Query 161320 ACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCA 161379 | ||||| ||||| || ||||||||||| ||| || || || || || ||||| || | Sbjct 2077 ATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAA 2018 Query 161380 CTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCA 161439 | ||| | || | || ||||| ||||| || || |||||||| |||||||| || | Sbjct 2017 CAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAA 1958 Query 161440 TCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACC 161499 |||| |||| | || || | | || || || | | |||||||| || | Sbjct 1957 TCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 161500 TTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 161549 | || |||||||||||||| |||||||| || ||||| |||||||| ||| Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGAT 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558302402196000