Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq4620 122 1e-22 seq4610 96.9 5e-15 seq110819 84.2 3e-11 >seq4620 Length=65515 Score = 122 bits (134), Expect = 1e-22 Identities = 230/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162490 GTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTT 162549 |||||||| || || ||| || ||||| || | ||||| || || || |||| | Sbjct 49263 GTTCAGGAAACGCCGCAGTCCGAGACCACGCCTTTCTATCCTCGCTCGCCCTATGCCGCC 49204 Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 || || || |||| | |||| ||| ||||| | ||| ||||| | ||||| Sbjct 49203 GCCAAGCTGTATGCTTACTGGGTCACTGTGAACTATCGCGAAGCCTATGGGCTGCATGCT 49144 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 || | ||| || || ||||||||||| ||| || | | || ||||| ||||| || ||| Sbjct 49143 TCAAACGGCATCCTCTTCAATCACGAGAGCCCAATCCGTGGCGAGACTTTCGTGACCCGC 49084 Query 162670 AAGATCGTCCGAGCCTTGTCC-CGA---ATTAGTGTGGGACTCCAAAGTGATCTACAACT 162725 |||||| || ||| || || ||| |||| || | ||| | || | || Sbjct 49083 AAGATCACGCGGGCCGTGGCCGCGATCCATTA----CGGTCGCCAGGATTGCCTTTATCT 49028 Query 162726 TGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTG 162785 || || ||| |||||||||| || ||||| |||||| ||||| || || | ||||| Sbjct 49027 CGGTAATCTCGATGCCCGACGGGATTGGGGTCACGCCCGCGACTATGTGGAAGGCATGTG 48968 Query 162786 GTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGT 162821 ||||||| | ||||| || ||| || || ||||| Sbjct 48967 GTTGATGATGCAGCAGGAATCGCCCGACGACTATGT 48932 >seq4610 Length=4342 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2147 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 2206 Query 142852 TCCGTTATTCTCCAC 142866 |||| |||||||||| Sbjct 2207 TCCGATATTCTCCAC 2221 >seq110819 Length=3230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 142790 TTCGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTC 142848 || |||| |||||||||| ||| |||||||| ||| | ||| ||| || |||| |||||| Sbjct 107 TTTGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCACCGGTTC 48 Query 142849 GAGTCCGTTATTCTCCACCAA 142869 || |||| ||||||||||||| Sbjct 47 GACTCCGGTATTCTCCACCAA 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690191323124400