Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1197 251 3e-64 >seq1197 Length=14044 Score = 251 bits (278), Expect = 3e-64 Identities = 236/294 (80%), Gaps = 11/294 (4%) Strand=Plus/Minus Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455 |||| || || ||||||||| |||||||||||||||||||||||| | ||||||| | Sbjct 12619 GGTTTTATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTATGC 12560 Query 456 GGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCAC 515 |||| |||||| || || |||||||||||| || ||| || | | ||||| Sbjct 12559 GGGTAGCAAACCTGTATGCATAATGAAAGTGAC---AGTTGGCAAATTTTAAAA-TGCAC 12504 Query 516 CATCGACCGATCCTGA-TGTCT--TCGGA---TGGATTTGAGTAAGAGCATAGCTGTTGG 569 || |||||| || | || | | | | ||| |||||||| ||||||| |||| | Sbjct 12503 CAACGACCGGACCAAAGTGGCAAATAGCAAACTGG-TTTGAGTATGAGCATAAATGTTAG 12445 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 12444 GACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAG 12385 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| |||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 12384 GCTCGAAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 12331 Score = 159 bits (176), Expect = 1e-36 Identities = 132/160 (83%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||| ||| | || |||| ||||| |||| || |||||||||| Sbjct 13077 GAGTCGTGTTCCTTGGGAATGGAGCACAAAGTGGGTGGTAATTTTCATCCAAAGCTAAAT 13018 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| || |||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 13017 ATTGGTGGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 12958 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||||| || |||||||| ||||||||||||| Sbjct 12957 AGAGAGTT-AAAAGTACCTGAAATTGCTGAAAGGGAAGCG 12919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079969154900