Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq18 215 9e-54 >seq18 Length=6171 Score = 215 bits (238), Expect = 9e-54 Identities = 199/247 (81%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATG 131 ||||||||||| |||||||||||| | ||||||||| ||| | |||||| |||||| Sbjct 5471 TTTTACTTTGAGAAAATTAGAGTGCTTAAAGCAGGCAACTGCCTTGAATACTCCAGCATG 5412 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| ||||| | | ||| | || |||||| ||||||| |||||| || Sbjct 5411 GAATAATAAGTAAGGACTTTTG--TCTTTCTTATTGGTT-CTAGGACAAAAGTAATGGTT 5355 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||| ||||| | ||||| || | |||||||||||||||| ||||| || Sbjct 5354 AATAGGGACAGTTGGGGGCATTCGTATTTAACAGCCAGAGGTGAAATTCTTAGATTTGTT 5295 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 5294 AAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 5236 Query 312 TTAGGGG 318 ||||||| Sbjct 5235 TTAGGGG 5229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198764480