Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq18 251 3e-64 >seq18 Length=6171 Score = 251 bits (278), Expect = 3e-64 Identities = 236/294 (80%), Gaps = 11/294 (4%) Strand=Plus/Minus Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455 |||| || || ||||||||| |||||||||||||||||||||||| | ||||||| | Sbjct 2749 GGTTTTATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTATGC 2690 Query 456 GGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCAC 515 |||| |||||| || || |||||||||||| || ||| || | | ||||| Sbjct 2689 GGGTAGCAAACCTGTATGCATAATGAAAGTGAC---AGTTGGCAAATTTTAAAA-TGCAC 2634 Query 516 CATCGACCGATCCTGA-TGTCT--TCGGA---TGGATTTGAGTAAGAGCATAGCTGTTGG 569 || |||||| || | || | | | | ||| |||||||| ||||||| |||| | Sbjct 2633 CAACGACCGGACCAAAGTGGCAAATAGCAAACTGG-TTTGAGTATGAGCATAAATGTTAG 2575 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 2574 GACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAG 2515 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| |||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 2514 GCTCGAAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 2461 Score = 159 bits (176), Expect = 1e-36 Identities = 132/160 (83%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||| ||| | || |||| ||||| |||| || |||||||||| Sbjct 3207 GAGTCGTGTTCCTTGGGAATGGAGCACAAAGTGGGTGGTAATTTTCATCCAAAGCTAAAT 3148 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| || |||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 3147 ATTGGTGGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 3088 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||||| || |||||||| ||||||||||||| Sbjct 3087 AGAGAGTT-AAAAGTACCTGAAATTGCTGAAAGGGAAGCG 3049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997104250