Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq18 567 2e-159 >seq18 Length=6171 Score = 567 bits (628), Expect = 2e-159 Identities = 433/505 (86%), Gaps = 24/505 (5%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||||||||| | | |||||||| ||||| |||||||||||||| Sbjct 5675 ACTCATTCCAATTACAAGACCGTTAGG--CCCTGTATTGTTATTTCTTGTCACTACCTCC 5732 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 5733 CTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTC 5792 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAG 181 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| Sbjct 5793 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTC-ATAGCCACGGTAG 5851 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| || |||||| || |||| ||||||| |||||| |||||||| |||| || Sbjct 5852 GCCAATACCCTACCGTCTAAAGCTGATAGGTCAGAAACTTGAATGATATGTCGCA---TC 5908 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 | | ||||||| ||| ||||||||||||||||||||| | |||||| Sbjct 5909 AGAG--ATGCGATCCGTAAAGTTATTATGAATCACCAAGCT-----------CATTGGTT 5955 Query 302 TTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||||||||||||||| |||||||| |||| ||| ||||| |||||||||||||||| Sbjct 5956 CTTTATCTAATAAATACAACCCTTCCGCGAAGTTGGGTTTTTTCGCATGTATTAGCTCTA 6015 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||||||||| | | |||||| ||||| ||||||| ||||||| Sbjct 6016 GAATTACCACGGTTATCCATGTAGTTTTG-ATTATCAAGTAAACTATAACTGTTTTAATG 6074 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||| Sbjct 6075 AGCCATTCGCAGTTTCGCCGTATAAAA-GCTTATACTTAGACATGCATGGCTTAATCTTT 6133 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 6134 GAGACAAGCATATGACTACTGGCAG 6158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397960960