Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq133 235 2e-59 seq130 235 2e-59 seq104 235 2e-59 seq85 235 2e-59 >seq133 Length=430812 Score = 235 bits (260), Expect = 2e-59 Identities = 224/281 (80%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | ||| | ||| Sbjct 428087 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATGTAAGTGAATAAAA 428146 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG--TGAGGGTGCACCATCGACC 523 | | ||||||||||||||| | |||||| | | | | ||||||| |||| Sbjct 428147 CTTATATGCGTAATGAAAGTGAC---AATTGGGAATCTTATTTATGATGCACCAATGACC 428203 Query 524 GATCCTGATGTCTTCGGATG-GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || | || | || | | | |||||||| ||||||| |||| |||||||||||||| Sbjct 428204 GACCACAATCTAA-CGAACGAGGTTTGAGTACGAGCATAAATGTTAGGACCCGAAAGATG 428262 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| | Sbjct 428263 GTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGAAGCGATA 428322 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 428323 CTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 428363 Score = 149 bits (164), Expect = 3e-33 Identities = 129/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || ||||||||| || | ||||||| ||||| |||| || |||||||||| Sbjct 427641 GAGTCGTATTCCTTGGGAATGGAGTGCAAAATGGGTGGTAATTTTCATCCAAAGCTAAAT 427700 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| ||| ||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 427701 ATTGATGAGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 427760 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||| ||||| || ||||||| | |||||||||| Sbjct 427761 AGAGAGTT-AAAAGTACCTGAAATTACTTAAAGGGAAGC 427798 >seq130 Length=374773 Score = 235 bits (260), Expect = 2e-59 Identities = 224/281 (80%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | ||| | ||| Sbjct 3980 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATGTAAGTGAATAAAA 4039 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG--TGAGGGTGCACCATCGACC 523 | | ||||||||||||||| | |||||| | | | | ||||||| |||| Sbjct 4040 CTTATATGCGTAATGAAAGTGAC---AATTGGGAATCTTATTTATGATGCACCAATGACC 4096 Query 524 GATCCTGATGTCTTCGGATG-GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || | || | || | | | |||||||| ||||||| |||| |||||||||||||| Sbjct 4097 GACCACAATCTAA-CGAACGAGGTTTGAGTACGAGCATAAATGTTAGGACCCGAAAGATG 4155 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| | Sbjct 4156 GTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGAAGCGATA 4215 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 4216 CTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 4256 Score = 149 bits (164), Expect = 3e-33 Identities = 129/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || ||||||||| || | ||||||| ||||| |||| || |||||||||| Sbjct 3534 GAGTCGTATTCCTTGGGAATGGAGTGCAAAATGGGTGGTAATTTTCATCCAAAGCTAAAT 3593 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| ||| ||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 3594 ATTGATGAGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 3653 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||| ||||| || ||||||| | |||||||||| Sbjct 3654 AGAGAGTT-AAAAGTACCTGAAATTACTTAAAGGGAAGC 3691 >seq104 Length=7065 Score = 235 bits (260), Expect = 2e-59 Identities = 224/281 (80%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | ||| | ||| Sbjct 2726 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATGTAAGTGAATAAAA 2667 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG--TGAGGGTGCACCATCGACC 523 | | ||||||||||||||| | |||||| | | | | ||||||| |||| Sbjct 2666 CTTATATGCGTAATGAAAGTGAC---AATTGGGAATCTTATTTATGATGCACCAATGACC 2610 Query 524 GATCCTGATGTCTTCGGATG-GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || | || | || | | | |||||||| ||||||| |||| |||||||||||||| Sbjct 2609 GACCACAATCTAA-CGAACGAGGTTTGAGTACGAGCATAAATGTTAGGACCCGAAAGATG 2551 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| | Sbjct 2550 GTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGAAGCGATA 2491 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 2490 CTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 2450 Score = 149 bits (164), Expect = 3e-33 Identities = 129/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || ||||||||| || | ||||||| ||||| |||| || |||||||||| Sbjct 3172 GAGTCGTATTCCTTGGGAATGGAGTGCAAAATGGGTGGTAATTTTCATCCAAAGCTAAAT 3113 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| ||| ||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 3112 ATTGATGAGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 3053 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||| ||||| || ||||||| | |||||||||| Sbjct 3052 AGAGAGTT-AAAAGTACCTGAAATTACTTAAAGGGAAGC 3015 >seq85 Length=187952 Score = 235 bits (260), Expect = 2e-59 Identities = 224/281 (80%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | ||| | ||| Sbjct 2726 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATGTAAGTGAATAAAA 2667 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG--TGAGGGTGCACCATCGACC 523 | | ||||||||||||||| | |||||| | | | | ||||||| |||| Sbjct 2666 CTTATATGCGTAATGAAAGTGAC---AATTGGGAATCTTATTTATGATGCACCAATGACC 2610 Query 524 GATCCTGATGTCTTCGGATG-GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || | || | || | | | |||||||| ||||||| |||| |||||||||||||| Sbjct 2609 GACCACAATCTAA-CGAACGAGGTTTGAGTACGAGCATAAATGTTAGGACCCGAAAGATG 2551 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| | Sbjct 2550 GTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGAAGCGATA 2491 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 2490 CTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 2450 Score = 149 bits (164), Expect = 3e-33 Identities = 129/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || ||||||||| || | ||||||| ||||| |||| || |||||||||| Sbjct 3172 GAGTCGTATTCCTTGGGAATGGAGTGCAAAATGGGTGGTAATTTTCATCCAAAGCTAAAT 3113 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| ||| ||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 3112 ATTGATGAGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 3053 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||| ||||| || ||||||| | |||||||||| Sbjct 3052 AGAGAGTT-AAAAGTACCTGAAATTACTTAAAGGGAAGC 3015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079996889750