Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq133 244 2e-62 seq130 244 2e-62 seq104 244 2e-62 seq85 244 2e-62 >seq133 Length=430812 Score = 244 bits (270), Expect = 2e-62 Identities = 243/311 (78%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| || || | | | |||||||| Sbjct 425959 GAACGAGACCTTAACCTGCTAAATAGACATAAGAAAATTATTTCTTATCTGTCTTCTTAG 426018 Query 80 AGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||| | | | || ||| |||||||| |||||||||||||||||||||||||| Sbjct 426019 AGGGACTTTGTGTGTTTAACACGA-GGAAGTTTTAGGCAATAACAGGTCTGTGATGCCCT 426077 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| ||||||||| ||||||||||||||| | ||| | ||| || ||| Sbjct 426078 TAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGTATCCATCAAGTAT-TCTCCTGTTT 426136 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || | | ||||||||||| | || | ||||| |||||||||| |||||||||||| Sbjct 426137 CGAAGGAAATGGGTAATCTTATGAATATACATCGTGATGGGGATAGATCATTGCAATTAT 426196 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 || ||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| Sbjct 426197 TGATCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCC 426256 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 426257 TGCCCTTTGTA 426267 >seq130 Length=374773 Score = 244 bits (270), Expect = 2e-62 Identities = 243/311 (78%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| || || | | | |||||||| Sbjct 1852 GAACGAGACCTTAACCTGCTAAATAGACATAAGAAAATTATTTCTTATCTGTCTTCTTAG 1911 Query 80 AGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||| | | | || ||| |||||||| |||||||||||||||||||||||||| Sbjct 1912 AGGGACTTTGTGTGTTTAACACGA-GGAAGTTTTAGGCAATAACAGGTCTGTGATGCCCT 1970 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| ||||||||| ||||||||||||||| | ||| | ||| || ||| Sbjct 1971 TAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGTATCCATCAAGTAT-TCTCCTGTTT 2029 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || | | ||||||||||| | || | ||||| |||||||||| |||||||||||| Sbjct 2030 CGAAGGAAATGGGTAATCTTATGAATATACATCGTGATGGGGATAGATCATTGCAATTAT 2089 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 || ||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| Sbjct 2090 TGATCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCC 2149 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 2150 TGCCCTTTGTA 2160 >seq104 Length=7065 Score = 244 bits (270), Expect = 2e-62 Identities = 243/311 (78%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| || || | | | |||||||| Sbjct 4854 GAACGAGACCTTAACCTGCTAAATAGACATAAGAAAATTATTTCTTATCTGTCTTCTTAG 4795 Query 80 AGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||| | | | || ||| |||||||| |||||||||||||||||||||||||| Sbjct 4794 AGGGACTTTGTGTGTTTAACACGA-GGAAGTTTTAGGCAATAACAGGTCTGTGATGCCCT 4736 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| ||||||||| ||||||||||||||| | ||| | ||| || ||| Sbjct 4735 TAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGTATCCATCAAGTAT-TCTCCTGTTT 4677 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || | | ||||||||||| | || | ||||| |||||||||| |||||||||||| Sbjct 4676 CGAAGGAAATGGGTAATCTTATGAATATACATCGTGATGGGGATAGATCATTGCAATTAT 4617 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 || ||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| Sbjct 4616 TGATCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCC 4557 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 4556 TGCCCTTTGTA 4546 >seq85 Length=187952 Score = 244 bits (270), Expect = 2e-62 Identities = 243/311 (78%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| || || | | | |||||||| Sbjct 4854 GAACGAGACCTTAACCTGCTAAATAGACATAAGAAAATTATTTCTTATCTGTCTTCTTAG 4795 Query 80 AGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||| | | | || ||| |||||||| |||||||||||||||||||||||||| Sbjct 4794 AGGGACTTTGTGTGTTTAACACGA-GGAAGTTTTAGGCAATAACAGGTCTGTGATGCCCT 4736 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| ||||||||| ||||||||||||||| | ||| | ||| || ||| Sbjct 4735 TAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGTATCCATCAAGTAT-TCTCCTGTTT 4677 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || | | ||||||||||| | || | ||||| |||||||||| |||||||||||| Sbjct 4676 CGAAGGAAATGGGTAATCTTATGAATATACATCGTGATGGGGATAGATCATTGCAATTAT 4617 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 || ||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| Sbjct 4616 TGATCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCC 4557 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 4556 TGCCCTTTGTA 4546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198626560