Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq78 214 7e-53 seq73 91.5 6e-16 >seq78 Length=377642 Score = 214 bits (236), Expect = 7e-53 Identities = 223/290 (77%), Gaps = 17/290 (6%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | || | ||| Sbjct 740 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATATAAGTAATTAAAA 799 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT------GAGGGTGCACCATC 519 | | || |||||||||||| | ||||| | || ||||||| Sbjct 800 CTTATATGCATAATGAAAGTGAC---AATTGGGATTTTTTTTAAAAGAAAATGCACCAAT 856 Query 520 GACCGATCCTGATGTC----TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACC 573 |||||| | || || || | || | |||||||| ||||||| |||| ||||| Sbjct 857 GACCGACATTAATTTCATTTTTTGAATTAAAGTTTGAGTATGAGCATAAATGTTAGGACC 916 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| Sbjct 917 CGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTC 976 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 977 GCAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 1026 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 296 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 355 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 356 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 414 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 415 AGTACCTGAAATTACTTAAAGGGAAGC 441 >seq73 Length=679 Score = 91.5 bits (100), Expect = 6e-16 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||| | ||||| || ||||| | ||||||||| | |||| Sbjct 679 GACCCGAAAGATGGTGAACTATACTTGAATTGGTTGAAGTCGAAGGAAACTCCGATGGAA 620 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA-AATTTGGGTATAGGGGCGA 683 | | ||| || || |||||||||| | | | |||||| |||||||||||| Sbjct 619 GACCTTAGCAGTATTGACGTGCAAATCATTTGCAAGAATTTGAGTATAGGGGCGA 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998326900