Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 203 6e-50 seq5 199 7e-49 >seq1 Length=1295931 Score = 203 bits (224), Expect = 6e-50 Identities = 196/247 (79%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATG 131 ||||||||||| |||||||||||| | ||||||||| | ||| | |||||| |||||| Sbjct 2532 TTTTACTTTGAGAAAATTAGAGTGCTTAAAGCAGGCATATGCCTTGAATACTCCAGCATG 2473 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| | || | ||| |||| |||||| ||| || |||||||| Sbjct 2472 GAATAATATTAAAGATTTTTA---TCTTTTTTATTGGTT-CTAAGATAAGAATAATGATT 2417 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||| ||||| | ||||| || |||||||||||||||||| ||||| || Sbjct 2416 AATAGGGACAGTTGGGGGCATTTGTATTTAACAGTCAGAGGTGAAATTCTTAGATTTGTT 2357 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||| ||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 2356 AAAGACAAACTAATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 2298 Query 312 TTAGGGG 318 ||||||| Sbjct 2297 TTAGGGG 2291 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 3699 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3640 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 3639 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 3581 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 3580 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 3521 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 3520 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 3461 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 3460 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 3424 >seq5 Length=884029 Score = 199 bits (220), Expect = 7e-49 Identities = 194/245 (79%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATG 131 ||||||||||| |||||||||||| | ||||||||| | ||| | |||||| |||||| Sbjct 202381 TTTTACTTTGAGAAAATTAGAGTGCTTAAAGCAGGCATATGCCTTGAATACTCCAGCATG 202440 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| | || | ||| |||| |||||| ||| || |||||||| Sbjct 202441 GAATAATATTAAAGATTTTTA---TCTTTTTTATTGGTT-CTAAGATAAGAATAATGATT 202496 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||| ||||| | ||||| || |||||||||||||||||| ||||| || Sbjct 202497 AATAGGGACAGTTGGGGGCATTTGTATTTAACAGTCAGAGGTGAAATTCTTAGATTTGTT 202556 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||| ||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 202557 AAAGACAAACTAATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 202615 Query 312 TTAGG 316 ||||| Sbjct 202616 TTAGG 202620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199835264