Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 214 7e-53 >seq5 Length=907609 Score = 214 bits (236), Expect = 7e-53 Identities = 223/290 (77%), Gaps = 17/290 (6%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | || | ||| Sbjct 206529 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATATAAGTAATTAAAA 206588 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT------GAGGGTGCACCATC 519 | | || |||||||||||| | ||||| | || ||||||| Sbjct 206589 CTTATATGCATAATGAAAGTGAC---AATTGGGATTTTTTTTAAAAGAAAATGCACCAAT 206645 Query 520 GACCGATCCTGATGTC----TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACC 573 |||||| | || || || | || | |||||||| ||||||| |||| ||||| Sbjct 206646 GACCGACATTAATTTCATTTTTTGAATTAAAGTTTGAGTATGAGCATAAATGTTAGGACC 206705 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| Sbjct 206706 CGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTC 206765 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 206766 GCAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 206815 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 206085 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 206144 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 206145 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 206203 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 206204 AGTACCTGAAATTACTTAAAGGGAAGC 206230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999613900