Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 527 2e-147 seq5 100 9e-19 >seq1 Length=1279005 Score = 527 bits (584), Expect = 2e-147 Identities = 423/505 (84%), Gaps = 24/505 (5%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||||| Sbjct 2928 ACTCATTCCAATTACAAAACCAAAAAGT--CCTGTATTGTTATTTCTTGTCACTACCTCC 2985 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2986 CTGTATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTC 3045 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct 3046 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCATTGCCACGGTAGG 3105 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || |||||| || |||| ||||||| |||||| |||||||| || | | | | Sbjct 3106 CCAATACCCTACCGTCTAAAGCTGATAGGTCAGAAACTTGAATGA--TAT-GTCACATTA 3162 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | || ||| ||| |||||||||||| ||||||| | |||||| Sbjct 3163 A----TTGTGATCCGTAAAGTTATTATGAGTCACCAATTA-----------TATTGGTTC 3207 Query 303 TTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||||||| Sbjct 3208 TTTATCTAATAAATACAACCCTTCCATAAAGTCGAGTTTTTTCGCATGTATTAGCTCTAG 3267 Query 361 AATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||||| ||||| | |||||| ||||| ||||||| | ||||| Sbjct 3268 AATTACCACGGTTATCCATGTAAGTAAAAGATTATCAAGTAAACTATAACTGTTATAATG 3327 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||| || ||||| | | |||||||||||||||||||||||||||||| Sbjct 3328 AGCCATTCGCAGTTTAACCGTATA-AAAGTTTATACTTAGACATGCATGGCTTAATCTTT 3386 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 3387 GAGACAAGCATATGACTACTGGCAG 3411 >seq5 Length=895426 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203600 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 203546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399486464