Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq66 248 1e-63 seq38 179 6e-43 seq67 154 2e-35 >seq66 Length=1254 Score = 248 bits (274), Expect = 1e-63 Identities = 198/233 (85%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||||| | Sbjct 1129 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 1072 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| ||||||||||||||||||||||||||||| | |||||| |||| Sbjct 1071 CTCGTTCAAGATCAATAATTGCAATGATCTATCCCCATCACGATGCATATTCAAAAGATT 1012 Query 120 ACCCGGACCTGTCGGCCAAGGTG-ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | ||| ||| ||| ||| | || || ||||||||||||||||| || Sbjct 1011 ACCCATTTCCTTCGAAACAGGAATATATACTTGATGGATGCATCAGTGTAGCGCGCGCGC 952 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||| ||||||||||||||||||||||||||||||||| |||||||| || Sbjct 951 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCCCTG 899 >seq38 Length=780 Score = 179 bits (198), Expect = 6e-43 Identities = 155/187 (83%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||||| | Sbjct 595 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 652 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG-AAATTTCAAAGATT 119 |||||| |||| ||| ||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 653 CTCGTTCAAGATCAATAATTGCAATGATCTATCCCCATCACGATGCATATTCAAAAGATT 712 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | ||| || | ||| ||| | || || ||||||||||||||||| || Sbjct 713 ACCCATTTCCTTCGAAACAGGAATATATACTTGATGGATGCATCAGTGTAGCGCGCGCGC 772 Query 179 GGCCCAG 185 ||||||| Sbjct 773 GGCCCAG 779 >seq67 Length=4355 Score = 154 bits (170), Expect = 2e-35 Identities = 111/124 (90%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||||| | Sbjct 138 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 81 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG-AAATTTCAAAGATT 119 |||||| |||| ||| ||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 80 CTCGTTCAAGATCAATAATTGCAATGATCTATCCCCATCACGATGCATATTCAAAAGATT 21 Query 120 ACCC 123 |||| Sbjct 20 ACCC 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999133085