Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq66 233 4e-59 seq38 161 2e-37 seq67 143 5e-32 >seq66 Length=1254 Score = 233 bits (258), Expect = 4e-59 Identities = 210/260 (81%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | | | || | | |||||||| |||||||||||||||||| Sbjct 870 CTTCTTAGAGGGACTTTGTATGTTTAATAC-AGGGAAGTTTTAGGCAATAACAGGTCTGT 928 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||||||||| ||||||||||||||| | ||| | ||| || Sbjct 929 GATGCCCTTAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGCATCCATCAAGTATATA 988 Query 190 ACCTTGGCCGGAAGGTC-TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | || ||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 989 TTCCTGTTTCGAAGGAAATGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCAT 1048 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||||| |||| |||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 1049 TGCAATTATTGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGA 1108 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 1109 TTACGTCCCTGCCCTTTGTA 1128 >seq38 Length=780 Score = 161 bits (178), Expect = 2e-37 Identities = 147/184 (80%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 146 CTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGT 205 ||||||||| ||||||||||||||| | ||| | ||| || | || ||||| Sbjct 779 CTGGGCCGCGCGCGCGCTACACTGATGCATCCATCAAGTATATATTCCTGTTTCGAAGGA 720 Query 206 C-TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 ||||||||||| | || | ||||| |||||||||| |||||||||||||| |||| Sbjct 719 AATGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCATTGCAATTATTGATCTT 660 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 |||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||| Sbjct 659 GAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCTGCCCTT 600 Query 325 TGTA 328 |||| Sbjct 599 TGTA 596 >seq67 Length=4355 Score = 143 bits (158), Expect = 5e-32 Identities = 105/122 (86%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||||||||||| | || | ||||| |||||||||| |||||||||||||| |||| | Sbjct 16 TGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCATTGCAATTATTGATCTTGA 75 Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 ||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||| Sbjct 76 ACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCTGCCCTTTG 135 Query 327 TA 328 || Sbjct 136 TA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198872832