Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq104 233 4e-59 seq103 143 5e-32 seq61 132 9e-29 >seq104 Length=1284 Score = 233 bits (258), Expect = 4e-59 Identities = 210/260 (81%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | | | || | | |||||||| |||||||||||||||||| Sbjct 425 CTTCTTAGAGGGACTTTGTATGTTTAATAC-AGGGAAGTTTTAGGCAATAACAGGTCTGT 367 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||||||||| ||||||||||||||| | ||| | ||| || Sbjct 366 GATGCCCTTAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGCATCCATCAAGTATATA 307 Query 190 ACCTTGGCCGGAAGGTC-TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | || ||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 306 TTCCTGTTTCGAAGGAAATGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCAT 247 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||||| |||| |||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 246 TGCAATTATTGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGA 187 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 186 TTACGTCCCTGCCCTTTGTA 167 >seq103 Length=2283 Score = 143 bits (158), Expect = 5e-32 Identities = 105/122 (86%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||||||||||| | || | ||||| |||||||||| |||||||||||||| |||| | Sbjct 2268 TGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCATTGCAATTATTGATCTTGA 2209 Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 ||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||| Sbjct 2208 ACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCTGCCCTTTG 2149 Query 327 TA 328 || Sbjct 2148 TA 2147 >seq61 Length=824 Score = 132 bits (146), Expect = 9e-29 Identities = 88/98 (90%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| |||||||||| |||||||||||||| |||| |||||||||| |||||||||||| Sbjct 824 GTGATGGGGATAGATCATTGCAATTATTGATCTTGAACGAGGAATTCCTAGTAAGCGCAA 765 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||| ||||||||||||||||||||||| Sbjct 764 GTCATCAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198522368