Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6 297 3e-78 seq5 297 3e-78 seq1 297 3e-78 >seq6 Length=877790 Score = 297 bits (328), Expect = 3e-78 Identities = 225/262 (86%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | ||| | | ||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1729 TACTTGATGGATGCATCAGTGTAGCGCGCGCGCGGCCCAGGACATCTAAGGGCATCACAG 1788 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||| |||||||| | | | | ||| ||||||||||||||| ||| Sbjct 1789 ACCTGTTATTGCCTAAAACTTCCCTGTATTAAACATACAA-AGTCCCTCTAAGAAGACAG 1847 Query 120 CCACCAACCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || ||| | | | |||||||||||||||||||||||||||||| |||| Sbjct 1848 ATAAAAAATATAATATTTCTTATGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGA 1907 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1908 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 1967 Query 237 AAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| Sbjct 1968 AAGAAAGAGCTATCAATCTGTC 1989 >seq5 Length=1385909 Score = 297 bits (328), Expect = 3e-78 Identities = 225/262 (86%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | ||| | | ||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1036677 TACTTGATGGATGCATCAGTGTAGCGCGCGCGCGGCCCAGGACATCTAAGGGCATCACAG 1036618 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||| |||||||| | | | | ||| ||||||||||||||| ||| Sbjct 1036617 ACCTGTTATTGCCTAAAACTTCCCTGTATTAAACATACAA-AGTCCCTCTAAGAAGACAG 1036559 Query 120 CCACCAACCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || ||| | | | |||||||||||||||||||||||||||||| |||| Sbjct 1036558 ATAAAAAATATAATATTTCTTATGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGA 1036499 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1036498 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 1036439 Query 237 AAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| Sbjct 1036438 AAGAAAGAGCTATCAATCTGTC 1036417 >seq1 Length=477241 Score = 297 bits (328), Expect = 3e-78 Identities = 225/262 (86%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | ||| | | ||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 476927 TACTTGATGGATGCATCAGTGTAGCGCGCGCGCGGCCCAGGACATCTAAGGGCATCACAG 476868 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||| |||||||| | | | | ||| ||||||||||||||| ||| Sbjct 476867 ACCTGTTATTGCCTAAAACTTCCCTGTATTAAACATACAA-AGTCCCTCTAAGAAGACAG 476809 Query 120 CCACCAACCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || ||| | | | |||||||||||||||||||||||||||||| |||| Sbjct 476808 ATAAAAAATATAATATTTCTTATGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGA 476749 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476748 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 476689 Query 237 AAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| Sbjct 476688 AAGAAAGAGCTATCAATCTGTC 476667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799899653