Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6 233 4e-59 seq5 233 4e-59 seq1 233 4e-59 >seq6 Length=877790 Score = 233 bits (258), Expect = 4e-59 Identities = 210/260 (81%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | | | || | | |||||||| |||||||||||||||||| Sbjct 1843 CTTCTTAGAGGGACTTTGTATGTTTAATAC-AGGGAAGTTTTAGGCAATAACAGGTCTGT 1785 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||||||||| ||||||||||||||| | ||| | ||| || Sbjct 1784 GATGCCCTTAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGCATCCATCAAGTATATA 1725 Query 190 ACCTTGGCCGGAAGGTC-TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | || ||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 1724 TTCCTGTTTCGAAGGAAATGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCAT 1665 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||||| |||| |||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 1664 TGCAATTATTGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGA 1605 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 1604 TTACGTCCCTGCCCTTTGTA 1585 >seq5 Length=1385909 Score = 233 bits (258), Expect = 4e-59 Identities = 210/260 (81%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | | | || | | |||||||| |||||||||||||||||| Sbjct 1036563 CTTCTTAGAGGGACTTTGTATGTTTAATAC-AGGGAAGTTTTAGGCAATAACAGGTCTGT 1036621 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||||||||| ||||||||||||||| | ||| | ||| || Sbjct 1036622 GATGCCCTTAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGCATCCATCAAGTATATA 1036681 Query 190 ACCTTGGCCGGAAGGTC-TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | || ||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 1036682 TTCCTGTTTCGAAGGAAATGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCAT 1036741 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||||| |||| |||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 1036742 TGCAATTATTGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGA 1036801 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 1036802 TTACGTCCCTGCCCTTTGTA 1036821 >seq1 Length=477241 Score = 233 bits (258), Expect = 4e-59 Identities = 210/260 (81%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | | | || | | |||||||| |||||||||||||||||| Sbjct 476813 CTTCTTAGAGGGACTTTGTATGTTTAATAC-AGGGAAGTTTTAGGCAATAACAGGTCTGT 476871 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||||||||| ||||||||||||||| | ||| | ||| || Sbjct 476872 GATGCCCTTAGATGTCCTGGGCCGCGCGCGCGCTACACTGATGCATCCATCAAGTATATA 476931 Query 190 ACCTTGGCCGGAAGGTC-TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | || ||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 476932 TTCCTGTTTCGAAGGAAATGGGTAATCTTTTGAATATGCATCGTGATGGGGATAGATCAT 476991 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||||| |||| |||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 476992 TGCAATTATTGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGA 477051 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 477052 TTACGTCCCTGCCCTTTGTA 477071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199876864