Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq54 199 7e-49 >seq54 Length=196647 Score = 199 bits (220), Expect = 7e-49 Identities = 195/247 (79%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATG 131 ||||||||||| |||||||||||| | ||||||||| | ||| | |||||| |||||| Sbjct 194622 TTTTACTTTGAGAAAATTAGAGTGCTTAAAGCAGGCATATGCCTTGAATACTCCAGCATG 194681 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| | || | ||| | || |||||| ||| || |||||||| Sbjct 194682 GAATAATATTAAAGATTTTTA---TCTTTCTTATTGGTT-CTAAGATAAAAATAATGATT 194737 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||| ||||| | ||||| || |||||||||||||||||| ||||| || Sbjct 194738 AATAGGGACAGTTGGGGGCATTTGTATTTAACAGTCAGAGGTGAAATTCTTAGATTTGTT 194797 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||| ||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 194798 AAAGACAAACTAATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 194856 Query 312 TTAGGGG 318 ||||||| Sbjct 194857 TTAGGGG 194863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199478336