Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq50 196 2e-47 seq7 140 1e-30 >seq50 Length=347251 Score = 196 bits (216), Expect = 2e-47 Identities = 126/138 (91%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 850 TTTGAGTATGAGCATAAATGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTG 909 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||| ||||||||||||||| |||||||||| | ||| ||||||||||| ||||||| Sbjct 910 AAGCCAGGGGAAACTCTGGTGGAAGCTCGCAGCGATACTGACGTGCAAATCGTTCGTCAA 969 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||||||||| Sbjct 970 ACTTGGGTATAGGGGCGA 987 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 260 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 319 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 320 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 378 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 379 AGTACCTGAAATTACTTAAAGGGAAGC 405 >seq7 Length=1436 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 568 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 509 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 508 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 450 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 449 AGTACCTGAAATTACTTAAAGGGAAGC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998777350