Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq46 107 2e-18 >seq46 Length=385502 Score = 107 bits (118), Expect = 2e-18 Identities = 382/587 (65%), Gaps = 15/587 (3%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||||| |||||| ||| ||| || || || || || || | ||||| | | || Sbjct 13083 ACAAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCGCACTAGTG 13024 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | ||||| ||||| | ||||| || || || |||||||| | |||||| Sbjct 13023 TACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATAGTACCCAAATTTTTCTGATTA 12964 Query 66113 CTCTTGCGATT-GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 || || | ||| ||| ||||| || || || | || || || ||||||| ||| | Sbjct 12963 CTTTTACTATTTGCA-GCATCTTTATAACAAATAAATGGTGTTCCCGTCTCAATTTGAGC 12905 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTAC--CTTTG 66229 || | ||| | |||||| | || |||| ||| | || || || | ||| Sbjct 12904 CTGCAAGATTAAGAACCAAAGTTTCTGCGCTTTCATCGTT--TTCCTTCC-ACGGCCTTG 12848 Query 66230 CGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288 | || || | ||| || || | | ||| |||||||| || || || | Sbjct 12847 TTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCCCAAACATCTTGCAATCCCCT 12788 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 || | | || ||||| || | |||||| ||||| ||| || | ||| || || Sbjct 12787 GCATTCATCCGGGCACATTAGAGTCCAATCTTGATCCTTTTCAACTCTCTCCATGAACAG 12728 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 |||||| | ||||||||| ||||||||||| || ||| || | |||||||| Sbjct 12727 ATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTCCCGTGATT 12668 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||| | | || | ||||| | | || | ||||| ||||||| || || || | Sbjct 12667 TTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCACGGTTCCAAATAAATTGCAAT 12608 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGAC 66525 | || |||| || || |||||||| || | || | ||| | |||| | | || Sbjct 12607 GGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT---AAAC 12551 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGA 66572 |||||||||||| | | ||||| || | ||||| || || |||| Sbjct 12550 ACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGT-CCCTCGA 12505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567723814480