Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 527 2e-147 >seq1 Length=1288507 Score = 527 bits (584), Expect = 2e-147 Identities = 422/505 (84%), Gaps = 25/505 (5%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||||| Sbjct 1298 ACTCATTCCAATTACAAAACCAAAAAGT--CCTGTATTGTTATTTCTTGTCACTACCTCC 1355 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1356 CTGTATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTC 1415 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct 1416 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCATTGCCACGGTAGG 1475 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || |||||| || |||| ||||||| |||||| |||||||| || | Sbjct 1476 CCAATACCCTACCGTCTAAAGCTGATAGGTCAGAAACTTGAATGATATGTCAC------- 1528 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | ||| ||| ||| |||||||||||| ||||||| | |||||| Sbjct 1529 ATTTAATGTGATCCGTAAAGTTATTATGAGTCACCAATTA-----------TATTGGTTC 1577 Query 303 TTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||||||| Sbjct 1578 TTTATCTAATAAATACAACCCTTCCATAAAGTCGAGTTTTTTCGCATGTATTAGCTCTAG 1637 Query 361 AATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||||| ||||| | | |||||| ||||| ||||||| | ||||| Sbjct 1638 AATTACCACGGTTATCCATGTAAGTAAAG-ATTATCAAGTAAACTATAACTGTTATAATG 1696 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||| || ||||| | | |||||||||||||||||||||||||||||| Sbjct 1697 AGCCATTCGCAGTTTAACCGTATA-AAAGTTTATACTTAGACATGCATGGCTTAATCTTT 1755 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 1756 GAGACAAGCATATGACTACTGGCAG 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399728128