Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5 527 2e-147 >seq5 Length=907760 Score = 527 bits (584), Expect = 2e-147 Identities = 422/505 (84%), Gaps = 25/505 (5%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||||| Sbjct 200721 ACTCATTCCAATTACAAAACCAAAAAGT--CCTGTATTGTTATTTCTTGTCACTACCTCC 200664 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 200663 CTGTATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTC 200604 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct 200603 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCATTGCCACGGTAGG 200544 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || |||||| || |||| ||||||| |||||| |||||||| || | Sbjct 200543 CCAATACCCTACCGTCTAAAGCTGATAGGTCAGAAACTTGAATGATATGTCAC------- 200491 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | ||| ||| ||| |||||||||||| ||||||| | |||||| Sbjct 200490 ATTTAATGTGATCCGTAAAGTTATTATGAGTCACCAATTA-----------TATTGGTTC 200442 Query 303 TTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||||||| Sbjct 200441 TTTATCTAATAAATACAACCCTTCCATAAAGTCGAGTTTTTTCGCATGTATTAGCTCTAG 200382 Query 361 AATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||||| ||||| | | |||||| ||||| ||||||| | ||||| Sbjct 200381 AATTACCACGGTTATCCATGTAAGTAAAG-ATTATCAAGTAAACTATAACTGTTATAATG 200323 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||| || ||||| | | |||||||||||||||||||||||||||||| Sbjct 200322 AGCCATTCGCAGTTTAACCGTATA-AAAGTTTATACTTAGACATGCATGGCTTAATCTTT 200264 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 200263 GAGACAAGCATATGACTACTGGCAG 200239 Score = 383 bits (424), Expect = 5e-104 Identities = 325/398 (82%), Gaps = 24/398 (6%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||||| Sbjct 201223 ACTCATTCCAATTACAAAACCAAAAAGT--CCTGTATTGTTATTTCTTGTCACTACCTCC 201166 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 201165 CTGTATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTC 201106 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct 201105 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCATTGCCACGGTAGG 201046 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || |||||| || |||| ||||||| |||||| |||||||| || | Sbjct 201045 CCAATACCCTACCGTCTAAAGCTGATAGGTCAGAAACTTGAATGATATGTCAC------- 200993 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | ||| ||| ||| |||||||||||| ||||||| | |||||| Sbjct 200992 ATTTAATGTGATCCGTAAAGTTATTATGAGTCACCAATTA-----------TATTGGTTC 200944 Query 303 TTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||||||| Sbjct 200943 TTTATCTAATAAATACAACCCTTCCATAAAGTCGAGTTTTTTCGCATGTATTAGCTCTAG 200884 Query 361 AATTACCACGGTTATCCATGT-AGTAAGGTACTATCAA 397 ||||||||||||||||||||| ||||| | | |||||| Sbjct 200883 AATTACCACGGTTATCCATGTAAGTAAAG-ATTATCAA 200847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399728128