Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 217 6e-54 >seq5 Length=889615 Score = 217 bits (240), Expect = 6e-54 Identities = 225/288 (78%), Gaps = 15/288 (5%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||||||||| |||||||||||||||||||||||| | ||| ||| | | ||| ||||| Sbjct 203255 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATATAAGTGATCAAAA 203314 Query 467 CCG-TGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG----AGGG--TGCACCATC 519 | | || |||||||||||| | ||||| | ||| ||||||| Sbjct 203315 CTTATATGCATAATGAAAGTGAC---AATTGGGATTTTTTTTAAAAGGAAATGCACCAAT 203371 Query 520 GACCGATCCTGATG--TCTTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCG 575 |||||| | || | || | || | |||||||| ||||||| |||| ||||||| Sbjct 203372 GACCGACATTAATTCATTTTTGAATTAAAGTTTGAGTATGAGCATAAATGTTAGGACCCG 203431 Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| Sbjct 203432 AAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGC 203491 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 203492 AGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 203539 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 202820 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 202879 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 202880 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 202938 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 202939 AGTACCTGAAATTACTTAAAGGGAAGC 202965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999613900