Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5 248 1e-63 seq1 154 2e-35 >seq5 Length=837796 Score = 248 bits (274), Expect = 1e-63 Identities = 198/233 (85%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||||| | Sbjct 142412 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 142355 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| ||||||||||||||||||||||||||||| | |||||| |||| Sbjct 142354 CTCGTTCAAGATCAATAATTGCAATGATCTATCCCCATCACGATGCATATTCAAAAGATT 142295 Query 120 ACCCGGACCTGTCGGCCAAGGTG-ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | ||| ||| ||| ||| | || || ||||||||||||||||| || Sbjct 142294 ACCCATTTCCTTCGAAACAGGAATATATACTTGATGGATGCATCAGTGTAGCGCGCGCGC 142235 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||| ||||||||||||||||||||||||||||||||| |||||||| || Sbjct 142234 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCCCTG 142182 >seq1 Length=1296567 Score = 154 bits (170), Expect = 2e-35 Identities = 96/102 (94%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 155 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 60 Query 215 TGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||| ||||||| ||| || |||||| || Sbjct 61 TGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAA 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999868870