Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 214 7e-53 >seq5 Length=837796 Score = 214 bits (236), Expect = 7e-53 Identities = 222/288 (77%), Gaps = 15/288 (5%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | || | ||| Sbjct 146932 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATATAAGTAATTAAAA 146991 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT------GAGGGTGCACCATC 519 | | || |||||||||||| | ||||| | || ||||||| Sbjct 146992 CTTATATGCATAATGAAAGTGAC---AATTGGGATTTTTTTTAAAAGAAAATGCACCAAT 147048 Query 520 GACCGATCCTGATG--TCTTCGGATGGA--TTTGAGTAAGAGCATAGCTGTTGGGACCCG 575 |||||| | || | || | || | |||||||| ||||||| |||| ||||||| Sbjct 147049 GACCGACATTAATTCATTTTTGAATTAAAGTTTGAGTATGAGCATAAATGTTAGGACCCG 147108 Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| Sbjct 147109 AAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGC 147168 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 147169 AGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 147216 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 144275 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 144334 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 144335 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 144393 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 144394 AGTACCTGAAATTACTTAAAGGGAAGC 144420 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 146494 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 146553 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 146554 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 146612 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 146613 AGTACCTGAAATTACTTAAAGGGAAGC 146639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999613900