Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5 297 3e-78 seq1 295 1e-77 >seq5 Length=837796 Score = 297 bits (328), Expect = 3e-78 Identities = 225/262 (86%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | ||| | | ||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 142267 TACTTGATGGATGCATCAGTGTAGCGCGCGCGCGGCCCAGGACATCTAAGGGCATCACAG 142208 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||| |||||||| | | | | ||| ||||||||||||||| ||| Sbjct 142207 ACCTGTTATTGCCTAAAACTTCCCTGTATTAAACATACAA-AGTCCCTCTAAGAAGACAG 142149 Query 120 CCACCAACCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || ||| | | | |||||||||||||||||||||||||||||| |||| Sbjct 142148 ATAAAAAATATAATATTTCTTATGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGA 142089 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142088 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 142029 Query 237 AAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| Sbjct 142028 AAGAAAGAGCTATCAATCTGTC 142007 >seq1 Length=1296567 Score = 295 bits (326), Expect = 1e-77 Identities = 214/245 (87%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 66 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-T 133 |||||||| | | || | | | |||||||||||||||||| ||| | | || | | Sbjct 67 AAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGCTGCGGAGGGATGGCT 126 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | |||| |||||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 127 CCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCG 186 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 187 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 246 Query 254 CTGTC 258 ||||| Sbjct 247 CTGTC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799861058