Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5 527 2e-147 seq3 116 1e-23 >seq5 Length=837796 Score = 527 bits (584), Expect = 2e-147 Identities = 422/505 (84%), Gaps = 25/505 (5%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||||| Sbjct 141316 ACTCATTCCAATTACAAAACCAAAAAGT--CCTGTATTGTTATTTCTTGTCACTACCTCC 141259 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 141258 CTGTATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTC 141199 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct 141198 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCATTGCCACGGTAGG 141139 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || |||||| || |||| ||||||| |||||| |||||||| || | Sbjct 141138 CCAATACCCTACCGTCTAAAGCTGATAGGTCAGAAACTTGAATGATATGTCAC------- 141086 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | ||| ||| ||| |||||||||||| ||||||| | |||||| Sbjct 141085 ATTTAATGTGATCCGTAAAGTTATTATGAGTCACCAATTA-----------TATTGGTTC 141037 Query 303 TTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||||||| Sbjct 141036 TTTATCTAATAAATACAACCCTTCCATAAAGTCGAGTTTTTTCGCATGTATTAGCTCTAG 140977 Query 361 AATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||||| ||||| | | |||||| ||||| ||||||| | ||||| Sbjct 140976 AATTACCACGGTTATCCATGTAAGTAAAG-ATTATCAAGTAAACTATAACTGTTATAATG 140918 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||| || ||||| | | |||||||||||||||||||||||||||||| Sbjct 140917 AGCCATTCGCAGTTTAACCGTATA-AAAGTTTATACTTAGACATGCATGGCTTAATCTTT 140859 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 140858 GAGACAAGCATATGACTACTGGCAG 140834 >seq3 Length=1229751 Score = 116 bits (128), Expect = 1e-23 Identities = 75/81 (93%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 ||||||||||| || ||||| | | |||||||||||||||||||||||||||||||||| Sbjct 1148265 ATTCGCAGTTTAACCGTATAAAA-GTTTATACTTAGACATGCATGGCTTAATCTTTGAGA 1148207 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 1148206 CAAGCATATGACTACTGGCAG 1148186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399728128