Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq501 199 7e-49 >seq501 Length=11692 Score = 199 bits (220), Expect = 7e-49 Identities = 195/247 (79%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATG 131 ||||||||||| |||||||||||| | ||||||||| || || | |||||| |||||| Sbjct 9977 TTTTACTTTGAGAAAATTAGAGTGCTTAAAGCAGGCATTAGCCTTGAATACTCCAGCATG 9918 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| | || | ||| | || |||||| ||| || |||||||| Sbjct 9917 GAATAATATTAAAGATTTTTA---TCTTTCTTATTGGTT-CTAAGATAAGAATAATGATT 9862 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||| ||||| | ||||| || |||||||||||||||||| ||||| || Sbjct 9861 AATAGGGACAGTTGGGGGCATTTGTATTTAACAGTCAGAGGTGAAATTCTTAGATTTGTT 9802 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||| ||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 9801 AAAGACAAACTAATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 9743 Query 312 TTAGGGG 318 ||||||| Sbjct 9742 TTAGGGG 9736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915192193344