Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq501 199 2e-48 >seq501 Length=11692 Score = 199 bits (220), Expect = 2e-48 Identities = 222/296 (75%), Gaps = 23/296 (8%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||| ||| | | ||| | ||| Sbjct 6948 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATATAAGTGATTAAAA 6889 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG---------------AGGG 510 | | || |||||||||||| | ||||| | | Sbjct 6888 CTTATATGCATAATGAAAGTGAC---AATTGGGATTTTTTTTTTTAAATTAAAATTAAAA 6832 Query 511 TGCACCATCGACCGATCCTGATG-TCTTCGGATGGA--TTTGAGTAAGAGCATAGCTGTT 567 ||||||| |||||| | || | || | || | |||||||| ||||||| |||| Sbjct 6831 TGCACCAATGACCGACATTAATTCTTTTTGAATTAAAGTTTGAGTATGAGCATAAATGTT 6772 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 6771 AGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGG 6712 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 6711 AAGCTCGCAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 6656 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 7393 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 7334 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 7333 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 7275 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 7274 AGTACCTGAAATTACTTAAAGGGAAGC 7248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079981703150