Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq501 297 3e-78 >seq501 Length=11692 Score = 297 bits (328), Expect = 3e-78 Identities = 225/262 (86%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | ||| | | ||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 9235 TACTTGATGGATGCATCAGTGTAGCGCGCGCGCGGCCCAGGACATCTAAGGGCATCACAG 9294 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||| |||||||| | | | | ||| ||||||||||||||| ||| Sbjct 9295 ACCTGTTATTGCCTAAAACTTCCCTGTATTAAACATACAA-AGTCCCTCTAAGAAGACAG 9353 Query 120 CCACCAACCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || ||| | | | |||||||||||||||||||||||||||||| |||| Sbjct 9354 ATAAAAAATATAATATTTCTTATGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGA 9413 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9414 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 9473 Query 237 AAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| Sbjct 9474 AAGAAAGAGCTATCAATCTGTC 9495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796793415693