Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq290 95.1 1e-14 >seq290 Length=478353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 362/562 (64%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 |||||| || || || || || || || || | || || || | ||||| ||||| Sbjct 253963 AGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCA 254022 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT-GCATGCAT 66131 | ||||| || || || |||||||||| ||| ||||| || | ||| ||| |||| Sbjct 254023 TAAGTTACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GCAT 254081 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACT-CAATGATGGCGTGCCAA 66190 |||| || || | || || || || |||| ||| | || |||| || |||| Sbjct 254082 CCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAAT-ATTAAAAACCAA 254140 Query 66191 AGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGG 66250 || | || |||| || | | | | |||| |||||| | |||||| | Sbjct 254141 AGTTTTTGCGCTTTCATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT 254200 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 | || |||||||| || || || | | |||| || || ||||||| Sbjct 254201 TTCCTAAACTCATCACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAG 254260 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 | |||||| ||||| ||| || | ||||||||||||||| | ||| ||||| Sbjct 254261 GTCCAATCTTGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGA 254320 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 ||||| || || || ||| || | ||||| ||||| | | || | ||||| Sbjct 254321 AAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCT 254380 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 | | ||| |||||||||||||| || || || | | || ||||||| || || Sbjct 254381 ACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCG 254440 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 ||||| || | || | ||| || || | || |||| ||| || | || || ||| Sbjct 254441 CCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTA 254500 Query 66551 GATTTGCCATTGGTGCCGTCGA 66572 || || |||||||| || |||| Sbjct 254501 GACTTCCCATTGGTTCC-TCGA 254521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563866907920