Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=1292604 Score = 100 bits (110), Expect = 2e-16 Identities = 373/580 (64%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||||| ||||| ||| || || ||||| || ||||| || || | | || Sbjct 443206 ACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGTG 443147 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | |||||||||||| | ||||||| | || || |||||||| | || ||| Sbjct 443146 TACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTTA 443087 Query 66113 CTCTTGCGATT-GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||||| | ||| ||| || |||||||| ||| | || || || || |||| ||| | Sbjct 443086 CTCTTACTATTCGCA-GCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 443028 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG---TACGTAC-CGCCCTACCTT 66227 | | ||| |||||| | ||||||| | | | | | || || ||| Sbjct 443027 TTGTAGGATTAAAAACCAAAGTTTCTGCGCCTTCATAGTTTTTCTTCCGCGGCCCTGCTT 442968 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 |||||| | ||| || || | | || |||||||| || || || | Sbjct 442967 ----TTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCCC 442912 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 || | | |||||||| || | |||||| || | || || | |||||||| Sbjct 442911 TGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAATA 442852 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 ||||||| | ||| ||||| ||||| || || || |||||| | || |||| Sbjct 442851 GATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGAT 442792 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || | | || | ||||| | | || ||||||| || |||| || || || | Sbjct 442791 TCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCAA 442732 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 || ||| | ||||| || ||||||||||| | || | ||| || || | || | Sbjct 442731 TCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACGC 442672 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 | ||||| || | || || ||||| | |||||||| || Sbjct 442671 GTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACC 442632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567869175280