Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq140 205 4e-50 >seq140 Length=74704 Score = 205 bits (226), Expect = 4e-50 Identities = 224/298 (75%), Gaps = 25/298 (8%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||||||| | | || | ||| Sbjct 1394 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTATATAAGTAATTAAAA 1453 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--------------- 510 | | || |||||||||||| | |||||| | | Sbjct 1454 CTTATATGCATAATGAAAGTGAC---AATTGGGAATTTTTTTGAAAAAAAAAAAGAAAAA 1510 Query 511 TGCACCATCGACCGATCCTGATGTC---TTCGGATGGA--TTTGAGTAAGAGCATAGCTG 565 ||||||| |||||| | || || || | || | |||||||| ||||||| || Sbjct 1511 TGCACCAATGACCGACATTAATTTCATTTTTGAATTAAAGTTTGAGTATGAGCATAAATG 1570 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1571 TTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGT 1630 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 1631 GGAAGCTCGCAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 1688 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 958 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 1017 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 1018 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 1076 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 1077 AGTACCTGAAATTACTTAAAGGGAAGC 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079994079800